[phenixbb] mr_rosetta problem

[Andreas Förster]

I didn't mention that Rosetta fails also:

andreas at csb6 in blah: 
/csb/soft/Linux64/share/rosetta3.4/rosetta_source/bin/mr_protocols.default.linuxgccrelease

/csb/soft/Linux64/share/rosetta3.4/rosetta_source/bin/mr_protocols.default.linuxgccrelease: 
error while loading shared libraries: libcppdb.so: cannot open shared 
object file: No such file or directory

This despite the fact that the library is found by ldd.


Andreas


On 23/06/2012 7:26, Nathaniel Echols wrote:
> On Sat, Jun 23, 2012 at 11:17 AM, Andreas Forster<docandreas at gmail.com>  wrote:
>> /csb/soft/Linux64/share/rosetta3.4/rosetta_source/bin/mr_protocols.default.linuxgccrelease:
>> error while loading shared libraries: libdevel.so: cannot open shared
>> object file: No such file or directory
>>
>> libdevel.so exists, in the right place I venture to say:
>>
>> ls -l /csb/soft/Linux64/share/rosetta3.4/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.4/libdevel.so
>> -rwxr-xr-x. 1 csbadmin csb 6437 Jun 23 18:44
>> /csb/soft/Linux64/share/rosetta3.4/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.4/libdevel.so
>
> If you run mr_protocols.default.linuxgccrelease from the command line,
> does it give you the same error?  You probably need to set
> LD_LIBRARY_PATH, i.e.:
>
> export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/csb/soft/Linux64/share/rosetta3.4/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.4/
>
> if you're a bash user - I forget the csh syntax.
>
> -Nat
>

-- 
         Andreas Förster, Research Associate
         Paul Freemont & Xiaodong Zhang Labs
Department of Biochemistry, Imperial College London
             http://www.msf.bio.ic.ac.uk