[phenixbb] merging in hires data in AutoBuild
Terwilliger, Thomas C
terwilliger at lanl.gov
Mon Mar 26 16:49:34 PDT 2012
I'm sorry, yes, that is a bug in Phenix version 1.7.3-928. It has since been fixed, so if you are able to download any recent version of Phenix it should work correctly. Please let me know if that does not do it!
All the best,
From: phenixbb-bounces at phenix-online.org [phenixbb-bounces at phenix-online.org] on behalf of Desiree Ho-Chi Fong, Ms [desiree.fong at mail.mcgill.ca]
Sent: Monday, March 26, 2012 2:39 PM
To: phenixbb at phenix-online.org
Subject: [phenixbb] merging in hires data in AutoBuild
I am using PHENIX 1.7.3-928 and I am trying to merge a high resolution native data set with a MAD data set in AutoBuild.
I have run AutoBuild through the GUI as well as on the command line. Here is the command I used:
phenix.autobuild data=AutoSol_run_1_/exptl_fobs_phases_freeR_flags_1.mtz hires_file=hires.mtz model=AutoSol_run_1_/overall_best.pdb rebuld_in_place=True
The data file, exptl_fobs_phases_freeR_flags.mtz from AutoBuild only includes data to the resolution of the MAD data set. The higher resolution native data was not incorporated into this mtz file.
Looking at the log file, the hires data was merged with expel_fobs_phases_freeR_flags_1.mtz from AutoSol (with AutoBuild after) and followed by anisotropy correction. This was then used for density modification. However, the high resolution data was never included in the mtz file for refinement in AutoBuild.
My understanding is that if hires data is specified in AutoBuild, the phases would be extended and included in map calculation as well as subsequent refinement. The output exptl_fobs_phases_freeR_flags.mtz from AutoBuild would also include the hires data for subsequent refinement. Is this correct?
Thank you for your help.
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