[phenixbb] generate_cif_for_NT_MPD
Xue-Yuan Pei
xyp20 at mole.bio.cam.ac.uk
Tue Mar 6 02:05:34 PST 2012
Yes, I did try to import both cif files (for nucleic acid and MPD
individually) into phenix.refine, but with no luck. any suggestion?
Regards,
Xue
On Mon, 5 Mar 2012, Kelly Daughtry wrote:
> Maybe I'm missing something here, but don't you just import both cif files (for nucleic acid, and MPD individually) into
> phenix.refine? Did you try that?Kelly Daughtry
>
>
> *******************************************************
> Kelly Daughtry, Ph.D.
> Post-Doctoral Fellow, Raetz Lab
> Biochemistry Department
> Duke University
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> P: 919-684-5178
> *******************************************************
>
>
> On Mon, Mar 5, 2012 at 12:29 PM, Xue-Yuan Pei <xyp20 at mole.bio.cam.ac.uk> wrote:
> Dear All:
> I am using phenix-1.7.2 to refine my structure. Now i am facing a problem with .cif file. I could not generate
> cif files for a modified nucleic acid and MPD at same time with phenix.elbow or phenix.ready_set. If I use
> phenix.elbow to generate cif file for modefied nucleic acid only, phenix .refine complains about MPD cif not
> found, same for MPD. If I combine two cif files together, phenix.refine also complains. Is there better to
> generate cif file containing both modified nucleic acid and MPD?
> Many thanks for your help,
> Xue
>
>
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