[phenixbb] Table 1 stastics

[Andrew Waight]

Hi All,

      Thanks for Phenix! Anyway quick question, I tried out the "generate
Table1" utility for fun and noticed that my I/SigI and completeness do not
match what is found in my XSCALE file.

   From Table 1

         Completeness (%)                   98.62 (90.57)
          Mean I/sigma(I)                     7.39 (1.59)
          Wilson B-factor                           59.78
                    R-sym
                 R-factor                 0.2006 (0.3275)
                   R-free                 0.2241 (0.3739)


   From XSCALE

 SUBSET OF INTENSITY DATA WITH SIGNAL/NOISE >= -3.0 AS FUNCTION OF
RESOLUTION
 RESOLUTION     NUMBER OF REFLECTIONS    COMPLETENESS R-FACTOR  R-FACTOR
COMPARED I/SIGMA   R-meas  CC(1/2)  Anomal  SigAno   Nano
   LIMIT     OBSERVED  UNIQUE  POSSIBLE     OF DATA   observed  expected
                                   Corr

    20.00         313      69        72       95.8%       3.6%      4.6%
   313   30.88     4.3%    99.9*     8    0.725      54
    10.00        2174     471       471      100.0%       3.9%      4.8%
  2174   28.71     4.4%    99.8*    34*   0.972     382
     6.00        8195    1983      1992       99.5%       4.7%      5.3%
  8160   20.70     5.4%    99.8*    12*   0.913    1299
     5.00        8055    1818      1820       99.9%       7.0%      6.9%
  8051   17.73     7.9%    99.5*     7    0.892    1337
     4.50        7207    1634      1636       99.9%       6.0%      6.2%
  7207   20.06     6.8%    99.6*    -1    0.824    1163
     4.00        9603    2479      2521       98.3%       6.8%      6.7%
  9536   17.05     7.9%    99.4*    -2    0.819    1369
     3.60       13641    3141      3156       99.5%       9.6%      9.5%
 13621   13.71    11.0%    99.1*    -2    0.799    2073
     3.20       22112    4948      4951       99.9%      16.5%     16.6%
 22083    8.82    18.8%    98.1*     4    0.810    3383
     3.00       14155    3550      3579       99.2%      27.8%     27.7%
 14058    5.45    32.1%    94.6*    -1    0.742    1875
     2.80       19676    4584      4611       99.4%      44.9%     46.2%
 19604    3.71    51.2%    88.5*     3    0.740    2750
     2.60       26749    6192      6202       99.8%      76.3%     78.4%
 26686    2.20    87.2%    71.8*     1    0.717    3598
     2.40       33999    8339      8388       99.4%     130.9%    132.7%
 33810    1.26   150.6%    48.5*     1    0.671    4170
     2.30       22347    5332      5348       99.7%     198.4%    206.4%
 22276    0.85   227.7%    31.5*     0    0.623    2685
    total      188226   44540     44747       99.5%       9.0%      9.4%
187579    7.09    10.3%    99.8*     2    0.755   26138

How does Phenix compute these parameters? Obviously my I/sigI has gotten
much better (1.59 versus 0.85) but the scaling statistics should be the
correct ones.


                       Thanks,

                                      Drew
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