[phenixbb] phenix.find_ncs_from_density density_search.dump_ncs_density doesn't output mtz
Francis Reyes
Francis.Reyes at colorado.edu
Wed Dec 11 10:03:40 PST 2013
Hi Tom
Phenix 1.8.4-1496 doesn't have this option for phenix.find_ncs_from_density ?
Thnx,
$ phenix.find_ncs_from_density find_ncs_from_density_params.eff ncs_mask_file=foo.mtz
Parameters taken from: find_ncs_from_density_params.eff
Sorry:
Sorry, cannot interpret the keyword: ncs_mask_file=foo.mtz
F
On Dec 11, 2013, at 8:33 AM, Terwilliger, Thomas C <terwilliger at lanl.gov> wrote:
> Hi Francis,
>
> Try this:
>
> phenix.find_ncs_from_density map_coeffs.mtz ncs_mask_file=ncs_mask.mtz
>
> and look for ncs_mask.mtz
>
> (dump_ncs_density instead dumps average density to temp_dir/ncs_avg_map_coeffs.mtz)
>
> All the best,
> Tom T
>
>
> On Dec 10, 2013, at 11:50 PM, Francis Reyes wrote:
>
>> I'd like to see the region of my maps that obey the NCS operators and I was hoping for separate mtz's for each region given I had set density_search.dump_ncs_density = True. However, I'm not getting any output mtzs. Any ideas?
>>
>> Thanks,
>> F
>>
>>
>>
>> ---------------------------------------------
>> Francis E. Reyes PhD
>> 215 UCB
>> University of Colorado at Boulder
>>
>>
>>
>>
>>
>>
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