[phenixbb] omit map for protein-DNA complex

Wei Shi wei.shi118 at gmail.com
Mon Jul 1 12:18:12 PDT 2013


Hi guys,
I've been trying to generate the omit map for a protein-DNA complex
structure using Phenix. I don't know why it takes forever to run and didn't
seem like to finish at all.... The resolution of the dataset is 3.2A. Omit
map type: simulated annealing. Omit region: composite. And, for the
corresponding apo-protein structure, the simulated annealing omit map was
generated within 2 or 3 hours on the same computer cluster. Let me know
whether you have any idea about what might go wrong and whether there is
anything I could do.... Thank you so much!

Best,
Wei
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