[phenixbb] map woes from refine
lodowski at gmail.com
Wed Mar 6 12:51:00 PST 2013
We are having exactly the same issue. Loading the "no_fill" map coefficents
manually gives a much more sensible map, but the map loaded from the GUI or
auto open mtz from coot looks exactly as Mischa is describing it. I can
confirm that this happens with 1312 and 1314 development builds.
On Wed, Mar 6, 2013 at 3:24 PM, Pavel Afonine <pafonine at lbl.gov> wrote:
> Hi Mischa,
> an industry user reported the same problem a few days ago but he could not
> send the data. So I really hope you can send me the files (data and model)
> so I can reproduce and fix this problem - this would be a huge help. There
> must be an obscure bug somewhere introduced in recent (after release)
> versions, but I can't figure out what it is.
> On 3/6/13 12:13 PM, Machius, Mischa Christian wrote:
>> Recently, I've run into an issue with the maps from refine. All during
>> the refinement cycles, the autoupdated maps in the associated coot window
>> look great as refinement progresses. However, the final maps look horrible;
>> completely chopped up. It's not a matter of contouring levels; it's
>> essentially unrecognizable, and phenix acknowledges that by stating very
>> low correlation coefficients at the end of the log file.
>> I have downloaded the latest builds in an attempt to address B-value
>> issues that were recently discussed and that I am (still) struggling with.
>> The map issue happens with all of them. Is it possible that there is some
>> crossfire from different versions, or any other reason?
>> Any help appreciated.
>> phenixbb mailing list
>> phenixbb at phenix-online.org
> phenixbb mailing list
> phenixbb at phenix-online.org
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