[phenixbb] quick clashlist or molprobity in batch mode
jan
jan.abendroth at gmail.com
Wed Mar 6 15:36:10 PST 2013
Hi all,
I want to analyze a whole bunch of structures with molprobity, and I am looking for a convenient way to do this.
phenix.quick_clashlist seems to be a handy tool. However, when I use the following command line:
"phenix.quick_clashlist model=mypdb.pdb"
... the output tells me:
# run_clashlist
#
# Run reduce and molprobity
# type phenix.run_clashlist: --help for help
Parameters used:
run_clashlist {
model = "4iuj.pdb"
build = True
summary_file = None
output_file = None
temp_dir = None
remove_temp_dir = None
verbose = False
raise_sorry = False
debug = False
dry_run = True
}
************************************************
'str' object has no attribute '_anchor'
************************************************
Any ideas what I need to do differently?
thanks,
Jan
--
Jan Abendroth
Emerald BioStructures
Seattle / Bainbridge Island WA, USA
home: Jan.Abendroth_at_gmail.com
work: JAbendroth_at_embios.com
http://www.emeraldbiostructures.com
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