[phenixbb] using reference model with polyA chain.
Francis Reyes
Francis.Reyes at colorado.edu
Tue Nov 19 16:03:52 PST 2013
I'm refining a structure ( at low res ), so I trimmed off all the side chain atoms from my model while my reference model still has these chains. I'm receiving errors like...
----------Correcting rotamer outliers to match reference model----------
** evaluating rotamers for working model **
A 502 ILE is missing some sidechain atoms, **skipping**
A 504 LYS is missing some sidechain atoms, **skipping**
A 505 VAL is missing some sidechain atoms, **skipping**
I don't care about the side chain atoms, but I'd still like the reference model restraints to provide secondary structure. Does "**skipping**" mean that the reference model is no longer being considered for the particular residue? Or will I still retain my secondary structure from the reference model?
Thanks,
F
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Francis E. Reyes PhD
215 UCB
University of Colorado at Boulder
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