[phenixbb] phenix.rosetta_refine

Morten Grøftehauge mortengroftehauge.work at gmail.com
Sun Oct 13 14:06:53 PDT 2013


So I'm guessing no RNA means no DNA either?
And no twin laws?

Cheers,
Morten


On 11 October 2013 20:01, Nathaniel Echols <nechols at lbl.gov> wrote:

> Yes, you should download one of the weekly releases of Rosetta.
>
>
> On Fri, Oct 11, 2013 at 11:57 AM, Guenter Fritz <
> guenter.fritz at uni-konstanz.de> wrote:
>
>>  PS,
>> in the paper you write that it only works with Rosetta 3.6; there is only
>> Rosetta 3.5 so far. Should one use the latest build?
>> Thanks, Guenter
>>
>>  On Fri, Oct 11, 2013 at 3:30 AM, Guenter Fritz <
>> guenter.fritz at uni-konstanz.de> wrote:
>>
>>> I am working on a 3.6 A structure and want to try the latest joint
>>> development of phenix and rosetta.
>>> Is there are kind of  "how_to" available online? Some do's and don'ts?
>>>
>>
>>  Yes, it's not as complete as I'd like, but here is the current
>> documentation:
>>
>>  https://www.phenix-online.org/version_docs/dev-1506/rosetta_refine.htm
>>
>>  Hopefully installation will be less traumatic in the near future - I
>> need to do some more experimenting with our installers but I was holding
>> back so we could release a new Phenix first.
>>
>>  I think for the long term we will need to come up with a variety of
>> "recipes" for using Rosetta - like phenix.refine, it is extremely flexible,
>> but the default behavior is tuned for a specific class of problems.
>>
>>  -Nat
>>
>>
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-- 
Morten K Grøftehauge, PhD
Pohl Group
Durham University
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