[phenixbb] Phenix composite omit map
eozkan at uchicago.edu
Mon Apr 21 10:10:22 PDT 2014
What version of Phenix are you using? phenix.composite_omit_map was
recently added (post 1.8.4 release). Are you using a recent nightly
(presumably dev-1579 as you suggest or even newer, like the release
candidate for 1.9)?
On 4/21/14, 12:05 PM, Chen Zhao wrote:
> Thank you Tom,
> I understand what "command not found" mean, but I already sourced
> "phenix_env" in my bashrc. "phenix.list" works, also I have already
> run "phenix.autosol", "phenix.autobuild", "phenix.refine" without any
> Thank you so much again!
> On Mon, Apr 21, 2014 at 1:01 PM, Terwilliger, Thomas C
> <terwilliger at lanl.gov <mailto:terwilliger at lanl.gov>> wrote:
> Hi Chen,
> "command not found" usually means the shell cannot find a
> particular command. It often can be fixed by sourcing the right
> setup commands.
> If you type:
> does it also say "command not found"? If so, you just need to
> source the phenix version you want. When you install it phenix
> lists where this directory is...If you are on a mac you will say
> something like this:
> source /Applications/PHENIX-1.8.3-1479/Contents/phenix-1.8.3-1479/phenix_env
> and you can put that in your .cshrc file too (if you are using csh).
> Let me know if that doesn't do it!
> All the best,
> Tom T
> On Apr 21, 2014, at 10:53 AM, Chen Zhao wrote:
>> Dear all,
>> Hello! I am now running into a simple technical problem but I
>> just cannot figure it out. I am trying to create a composite omit
>> map by phenix, but when I typed in the
>> commandphenix.composite_omit_map XXX.eff based on the
>> instructions on
>> I got the error message "command not found". Could anybody help
>> me out?
>> Thank you so much in advance!
> phenixbb mailing list
> phenixbb at phenix-online.org
Dept of Biochemistry and Molecular Biology
University of Chicago
-------------- next part --------------
An HTML attachment was scrubbed...
More information about the phenixbb