[phenixbb] Phenix composite omit map

[Engin Özkan]

Dear Chen,

What version of Phenix are you using? phenix.composite_omit_map was 
recently added (post 1.8.4 release). Are you using a recent nightly 
(presumably dev-1579 as you suggest or even newer, like the release 
candidate for 1.9)?

Engin

On 4/21/14, 12:05 PM, Chen Zhao wrote:
> Thank you Tom,
>
> I understand what "command not found" mean, but I already sourced 
> "phenix_env" in my bashrc. "phenix.list" works, also I have already 
> run "phenix.autosol", "phenix.autobuild", "phenix.refine" without any 
> problems.
>
> Thank you so much again!
>
> Sincerely,
> Chen
>
>
> On Mon, Apr 21, 2014 at 1:01 PM, Terwilliger, Thomas C 
> <terwilliger at lanl.gov <mailto:terwilliger at lanl.gov>> wrote:
>
>     Hi Chen,
>
>     "command not found" usually means the shell cannot find a
>     particular command.  It often can be fixed by sourcing the right
>     setup commands.
>
>     If you type:
>
>       phenix.list
>
>     does it also say "command not found"?  If so, you just need to
>     source the phenix version you want.  When you install it phenix
>     lists where this directory is...If you are on a mac you will say
>     something like this:
>
>       source /Applications/PHENIX-1.8.3-1479/Contents/phenix-1.8.3-1479/phenix_env
>
>     and you can put that in your .cshrc file too (if you are using csh).
>
>     Let me know if that doesn't do it!
>     All the best,
>     Tom T
>
>
>
>
>     On Apr 21, 2014, at 10:53 AM, Chen Zhao wrote:
>
>>     Dear all,
>>
>>     Hello! I am now running into a simple technical problem but I
>>     just cannot figure it out. I am trying to create a composite omit
>>     map by phenix, but when I typed in the
>>     commandphenix.composite_omit_map XXX.eff based on the
>>     instructions on
>>     http://www.phenix-online.org/version_docs/dev-1579/composite_omit_map.htm,
>>     I got the error message "command not found". Could anybody help
>>     me out?
>>
>>     Thank you so much in advance!
>>
>>     Sincerely,
>>     Chen
>
>
>
>
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-- 
Assistant Professor
Dept of Biochemistry and Molecular Biology
University of Chicago

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