[phenixbb] Phenix composite omit map

Chen Zhao c.zhao at yale.edu
Mon Apr 21 10:11:14 PDT 2014


But I forgot to mention that phenix.composite_omit_map is not in the list...


On Mon, Apr 21, 2014 at 1:05 PM, Chen Zhao <c.zhao at yale.edu> wrote:

> Thank you Tom,
>
> I understand what "command not found" mean, but I already sourced
> "phenix_env" in my bashrc. "phenix.list" works, also I have already run
> "phenix.autosol", "phenix.autobuild", "phenix.refine" without any problems.
>
> Thank you so much again!
>
> Sincerely,
> Chen
>
>
> On Mon, Apr 21, 2014 at 1:01 PM, Terwilliger, Thomas C <
> terwilliger at lanl.gov> wrote:
>
>>  Hi Chen,
>>
>>  "command not found" usually means the shell cannot find a particular
>> command.  It often can be fixed by sourcing the right setup commands.
>>
>>  If you type:
>>
>>    phenix.list
>>
>>  does it also say "command not found"?  If so, you just need to source
>> the phenix version you want.  When you install it phenix lists where this
>> directory is...If you are on a mac you will say something like this:
>>
>>
>>   source /Applications/PHENIX-1.8.3-1479/Contents/phenix-1.8.3-1479/phenix_env
>>
>>  and you can put that in your .cshrc file too (if you are using csh).
>>
>>  Let me know if that doesn't do it!
>> All the best,
>> Tom T
>>
>>
>>
>>
>>  On Apr 21, 2014, at 10:53 AM, Chen Zhao wrote:
>>
>>  Dear all,
>>
>> Hello! I am now running into a simple technical problem but I just cannot
>> figure it out. I am trying to create a composite omit map by phenix, but
>> when I typed in the command phenix.composite_omit_map XXX.eff based on
>> the instructions on
>> http://www.phenix-online.org/version_docs/dev-1579/composite_omit_map.htm,
>> I got the error message "command not found". Could anybody help me out?
>>
>> Thank you so much in advance!
>>
>>  Sincerely,
>> Chen
>>
>>
>>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://phenix-online.org/pipermail/phenixbb/attachments/20140421/cd5a7a1b/attachment.htm>


More information about the phenixbb mailing list