[phenixbb] compiling phenix from source error

[irees at lbl.gov]

Xrender can fail for many reasons, but generally missing X11 libraries or headers on your system. Can you send the log file:


/pgmax/phenix-installer-dev-1839/install_tmp/intel-linux-2.6-x86_64/A7K/Xrender_install_log




Thanks,

Ian


—
Sent from Mailbox

On Mon, Dec 8, 2014 at 4:30 PM, Maxime Cuypers <maximecuypers at gmail.com>
wrote:

> hi all,
> am getting the following error installing phenix from source dev-1839.
> (tried with source from 1.9-1692 with same error) am on latest kubuntu.
> any idea on how to debug? -see below report...
> PS: am compiling from source because i need a minor modification of the
> neutron scattering table which requires compilation.
> cheerios,
> ....
> Installing Xrender...
>   log file is
> /pgmax/phenix-installer-dev-1839/install_tmp/intel-linux-2.6-x86_64/A7K/Xrender_install_log
>   getting package xrender-0.8.3.tar.gz...
>     using /pgmax/phenix-installer-dev-1839/gui/xrender-0.8.3.tar.gz
> Traceback (most recent call last):
>   File "./bin/install.py", line 815, in <module>
>     run(sys.argv[1:])
>   File "./bin/install.py", line 72, in __init__
>     self.install_from_source()
>   File "./bin/install.py", line 292, in install_from_source
>     log=out)
>   File
> "/pgmax/phenix-installer-dev-1839/lib/libtbx/auto_build/install_base_packages.py",
> line 115, in __init__
>     self.build_cctbx_dependencies()
>   File
> "/pgmax/phenix-installer-dev-1839/lib/libtbx/auto_build/install_base_packages.py",
> line 170, in build_cctbx_dependencies
>     self.build_wxpython_dependencies()
>   File
> "/pgmax/phenix-installer-dev-1839/lib/libtbx/auto_build/install_base_packages.py",
> line 440, in build_wxpython_dependencies
>     self.build_wxpython_dependencies_linux()
>   File
> "/pgmax/phenix-installer-dev-1839/lib/libtbx/auto_build/install_base_packages.py",
> line 507, in build_wxpython_dependencies_linux
>     self.build_compiled_package_simple(pkg_name=pkg, pkg_name_label=name)
>   File
> "/pgmax/phenix-installer-dev-1839/lib/libtbx/auto_build/install_base_packages.py",
> line 385, in build_compiled_package_simple
>     log=pkg_log)
>   File
> "/pgmax/phenix-installer-dev-1839/lib/libtbx/auto_build/install_base_packages.py",
> line 203, in configure_and_build
>     self.call("./configure %s" % " ".join(list(config_args)), log=log)
>   File
> "/pgmax/phenix-installer-dev-1839/lib/libtbx/auto_build/install_base_packages.py",
> line 200, in call
>     return call(args, log=log)
>   File
> "/pgmax/phenix-installer-dev-1839/lib/libtbx/auto_build/installer_utils.py",
> line 53, in call
>     raise RuntimeError("Call to '%s' failed with exit code %d" % (args, rc))
> RuntimeError: Call to './configure
> --prefix="/usr/local/phenix-dev-1839/build/intel-linux-2.6-x86_64/base"'
> failed with exit code 1
> max at A7K:/pgmax/phenix-installer-dev-1839$ uname -a
> Linux A7K 3.13.0-40-generic #69-Ubuntu SMP Thu Nov 13 17:53:56 UTC 2014
> x86_64 x86_64 x86_64 GNU/Linux
> -- 
> Dr. Maxime Cuypers
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