[phenixbb] revisiting "Problem with loop fitting "
alebus at pasteur.edu.uy
Sat Feb 22 13:28:24 PST 2014
Dear phenix community
I am attempting to use phenix.fit_loops for the first time and getting
an error message:
"No suitable gap found matching residues"
I found a short exchange exactly about this (Jan 2011), but eventually
Tom Terwilliger asked for the files directly to see if he could solve it.
I can't seem to find a later summary of the solution.
(apparently, the most probable reason was some kind of mismatch between
PDB numbering and sequence file...which I shouldn't have... I'm probably
missing some silly here - I have been fiddling around with the sequence
file in many ways...with no success)
many thanks for any help!
Alejandro Buschiazzo, PhD
Unit of Protein Crystallography
Institut Pasteur de Montevideo
Phone: +598 25220910 int. 120
Fax: +598 25224185
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