[phenixbb] Option for renumber the pdb
Mooers, Blaine H.M. (HSC)
Blaine-Mooers at ouhsc.edu
Thu Feb 27 08:06:55 PST 2014
Those ccp4 options are excellent. Another option is the easy-to-use PDB Editor http://www.bioinformatics.org/pdbeditor/wiki/. I find it to be very versatile for editing PDB files.
Blaine Mooers
Assistant Professor
Department of Biochemistry and Molecular Biology
University of Oklahoma Health Sciences Center
S.L. Young Biomedical Research Center Rm. 466
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________________________________________
From: phenixbb-bounces at phenix-online.org [phenixbb-bounces at phenix-online.org] On Behalf Of Jeffrey, Philip D. [pjeffrey at princeton.edu]
Sent: Thursday, February 27, 2014 2:04 AM
To: Rojan Shrestha; PHENIX user mailing list
Subject: Re: [phenixbb] Option for renumber the pdb
Both CCP4's PDBSET and COOT should do what you want (i.e. offset the numbering by 250)
Phil Jeffrey
Princeton
________________________________
From: phenixbb-bounces at phenix-online.org [phenixbb-bounces at phenix-online.org] on behalf of Rojan Shrestha [rojan at riken.jp]
Sent: Thursday, February 27, 2014 12:21 AM
To: PHENIX user mailing list
Subject: [phenixbb] Option for renumber the pdb
Hello,
I have found the program phenix.pdbtools. Maybe, it can renumber residues of pdb. I have found the options renumber_residues options but I am unable to see the options for starting residues.
I have pdb starts from 1 and want to renumber 1 into 250. Can somebody tell me how to put the option for starting residue?
Regards,
Rojan
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