[phenixbb] Option for renumber the pdb

Nathaniel Echols nechols at lbl.gov
Thu Feb 27 08:27:09 PST 2014


Quick update: I've added an increment_resseq option that does what you
want; it will be in the next build.

-Nat


On Wed, Feb 26, 2014 at 11:23 PM, Nathaniel Echols <nechols at lbl.gov> wrote:

> I don't think pdbtools has this right now, although it can probably be
> added with minimal effort.  If you're willing and able to edit your model
> interactively, phenix.pdb_editor is much more flexible (but it's a GUI, so
> not suitable for automated use).
>
> Of course I'm pretty sure Coot can do this too.
>
> -Nat
>
>
> On Wed, Feb 26, 2014 at 9:21 PM, Rojan Shrestha <rojan at riken.jp> wrote:
>
>> Hello,
>>
>> I have found the program phenix.pdbtools. Maybe, it can renumber residues
>> of pdb. I have found the options *renumber_residues* options but I am
>> unable to see the options for starting residues.
>>
>> I have pdb starts from 1 and want to renumber 1 into 250. Can somebody
>> tell me how to put the option for starting residue?
>>
>> Regards,
>>
>> Rojan
>>
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>> http://phenix-online.org/mailman/listinfo/phenixbb
>>
>>
>
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