[phenixbb] real space refinement

[George Devaniranjan]

Hi Pavel,

Thank you, I have also tried COOT but I wanted to know whether anyone had
used (with success ) other similar tools.

Why? Mostly curiosity :) but also to do a comparison I guess of performance.

Thank you, I will check some of the others you have mentioned.

George


On Mon, Jul 28, 2014 at 9:29 AM, Pavel Afonine <pafonine at lbl.gov> wrote:

>  Hi George,
>
> as far as I know phenix.real_space_refine is the only user-exposed
> real-space refinement utility in Phenix. You can think of Tom's morphing as
> a kind of real-space refinement (phenix.morph_model). Also, you can think
> of mmtbx.lockit as a simplest version of phenix.real_space_refine.
>
> Outside Phenix I would say Coot, Chimera, HermiteFit, ... there are many
> more and Google is your friend to find them.
>
> Just curious: why?
>
> Pavel
>
>
> On 7/28/14, 9:19 AM, George Devaniranjan wrote:
>
> Hi,
>
>  I know this is going to sound blasphemous in phenix (my apology
> particularly to Pavel) but is there other s/w that does similar things to
> phenix.real_space_refine ?
>
>  I used that already (works very well) but was wondering if there was
> anything similar out there to do a comparison.
>
>  Thank you,
> George
>
>
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>
>
>
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