[phenixbb] HLs not recognised
Nathaniel Echols
nechols at lbl.gov
Mon May 12 07:44:14 PDT 2014
This is a little strange - the GUI should not be allowing you to select an
array that won't work for refinement. Could you please send me (off-list!)
both MTZ files that you tried using? (I don't think I need data or
anything else for this.)
thanks,
Nat
On Mon, May 12, 2014 at 5:49 AM, Jonathan Grimes
<jonathan at strubi.ox.ac.uk>wrote:
>
> i have now used phenix to read in the mtz file, read all the arrays
> and make a new mtz file.
>
> phenix recognised the HLs as Hend/latt coeffs.
>
> i used the eff file to run phenix.refine at the command line
> and got this error
>
> Not a suitable array of experimental phases:
> refinement.input.experimental_phases.labels=HLA,HLB,HLC,HL
>
> The phases were orginally derived by Phenix using the auto solve GUI.
>
> Jon
>
>
> Dr. Jonathan M. Grimes,
> NDM Senior Reseach Fellow Diamond Research
> Fellow
> University Research Lecturer Diamond Light
> Source
> Division of Structural Biology Diamond House
> Wellcome Trust Centre for Human Genetics Harwell Science Campus
> University of Oxford Didcot
> Roosevelt Drive, OX11 0DE
> Oxford OX3 7BN, UK
>
> Email: Jonathan at strubi.ox.ac.uk, Web: www.strubi.ox.ac.uk
> Tel: (+44) - 1865 - 287561, FAX: (+44) - 1865 - 287547
>
>
>
> ---- Original message ----
> >Date: Mon, 12 May 2014 11:32:39 +0100
> >From: phenixbb-bounces at phenix-online.org (on behalf of Jonathan Grimes <
> jonathan at strubi.ox.ac.uk>)
> >Subject: [phenixbb] HLs not recognised
> >To: phenixbb at phenix-online.org
> >
> >
> > I am trying to refine a structure at low resolution and would like to
> > use phase restraints. using the GUI even though HLs are present
> > in the MTZ file, and are type “A”…checked with CAD…..i am not given
> > the option of selecting them.
> >
> > not clear to me what I’m doing wrong.
> >
> > hints most wellcome
> > thanks
> > jon
> >
> >
> >Dr. Jonathan M. Grimes,
> >NDM Senior Reseach Fellow
> >University Research Lecturer
> >DIAMOND Research Fellow
> >
> >Division of Structural Biology
> >Wellcome Trust Centre for Human Genetics
> >University of Oxford
> >Roosevelt Drive,
> >Oxford OX3 7BN, UK
> >
> >Email: Jonathan at strubi.ox.ac.uk, Web: www.strubi.ox.ac.uk
> >Tel: (+44) - 1865 - 287561, FAX: (+44) - 1865 - 287547
> >
> >_______________________________________________
> >phenixbb mailing list
> >phenixbb at phenix-online.org
> >http://phenix-online.org/mailman/listinfo/phenixbb
> _______________________________________________
> phenixbb mailing list
> phenixbb at phenix-online.org
> http://phenix-online.org/mailman/listinfo/phenixbb
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://phenix-online.org/pipermail/phenixbb/attachments/20140512/4f2e0d8b/attachment.htm>
More information about the phenixbb
mailing list