[phenixbb] phenix rosetta refine

Ivan IVANOV ivanov at embl.fr
Wed Nov 26 10:07:56 PST 2014


I got the same errors running rosetta in Phneix. It took me lots of time 
to make it run. I had to change the version of Phénix.

I hope it helped.

Ivan
On 2014-11-26 17:18, Andreas Förster wrote:
> Dear all,
> 
> I'm trying to get phenix.rosetta_refine to run.  I think it's all set
> up properly, with Rosetta 3.5 and Phenix 1810 on RHEL 6.3 64bit.
> 
> However
> 
> phenix.rosetta_refine model.pdb data.mtz nproc=48 protocol=full > log&
> 
> fails with the following error in log:
> 
> End of input processing
> Sorry: The RosettaScripts executable could not be located.  Please add
> the appropriate directory to your PATH environment variable, or set
> the variable ROSETTA_BIN to point to it.
> 
> 
> To me it seems things are defined correctly:
> 
> andreas at csbstereo in phenix: echo $ROSETTA_BIN
> /csb/soft/Linux64/share/rosetta3.5/rosetta_source/bin
> 
> andreas at csbstereo in phenix: ls $ROSETTA_BIN | grep scripts
> rosetta_scripts.linuxgccrelease@
> rosetta_scripts.default.linuxgccrelease@
> 
> andreas at csbstereo in phenix: ll 
> $ROSETTA_BIN/rosetta_scripts.linuxgccrelease
> lrwxrwxrwx 1 csbadmin csb 93 Oct  9  2013
> /csb/soft/Linux64/share/rosetta3.5/rosetta_source/bin/rosetta_scripts.linuxgccrelease
> ->
> ../build/src/release/linux/2.6/64/x86/gcc/4.4/default/rosetta_scripts.default.linuxgccrelease
> 
> 
> Any idea of what's wrong would be greatly appreciated.
> 
> 
> Andreas


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