[phenixbb] Calculate average B-factor?

[Ed Pozharski]

grep "^ATOM  " filename.pdb | cut -c 61-66 | awk '{s+=$1;} END {print s/NR;}'

"Nobody likes a show off, Private"
                                           Skipper

Cheers


Sent on a Sprint Samsung Galaxy S® III

<div>-------- Original message --------</div><div>From: Chen Zhao <c.zhao at yale.edu> </div><div>Date:10/04/2014  4:03 PM  (GMT-05:00) </div><div>To: PHENIX user mailing list <phenixbb at phenix-online.org> </div><div>Subject: [phenixbb] Calculate average B-factor? </div><div>
</div>Dear all,

I am just wondering whether there is a command line tool in phenix that calculates the average B-factor of a PDB file? Can it deal with the ANISOU records (from TLS refinement or not) properly? I looked into previous posts but the  --show-adp-statistics option in phenix.pdbtools seems to be no longer available in the version (1.9-1678) I installed.

Thank you so much,
Chen
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://phenix-online.org/pipermail/phenixbb/attachments/20141004/048c8f2b/attachment.htm>