[phenixbb] sugar puckering refinement with phenix refine

[Nigel Moriarty]

Almudena

The restraints applied to RNA is based on the starting puckers. It tries to
restrain it to the 2-prime or 3-prime starting geometry.

Cheers

Nigel

---
Nigel W. Moriarty
Building 64R0246B, Physical Biosciences Division
Lawrence Berkeley National Laboratory
Berkeley, CA 94720-8235
Phone : 510-486-5709     Email : NWMoriarty at LBL.gov
Fax   : 510-486-5909       Web  : CCI.LBL.gov

On Mon, Apr 13, 2015 at 8:34 AM, Almudena Ponce Salvatierra <
maps.farma at gmail.com> wrote:

> Dear all,
>
> does anyone know how phenix.refine deals with the sugar puckering of an
> RNA or a DNA strand? Does it refine it? Or does it leave it as it was
> built?
>
> Thank you very much in advance.
>
>
> Best wishes,
>
> Almudena
>
> --
> Almudena Ponce-Salvatierra
> Macromolecular crystallography and Nucleic acid chemistry
> Max Planck Institute for Biophysical Chemistry
> Am Fassberg 11 37077 Göttingen
> Germany
>
>
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