[phenixbb] phenix.refine automatic linking options
eozkan at uchicago.edu
Thu Aug 20 13:41:31 PDT 2015
Dear Billy and Nigel,
Thank you. Phenix.refine GUI in the latest nightly/release candidate no
longer has the master enable/disable button, and so the problem is resolved.
On 8/13/15 11:28 AM, Billy Poon wrote:
> Hi Engin,
> Thanks! We updated that part of the GUI so that it should be more
> intuitive. There is now a button that lets you apply automatic linking
> to all the components and a button that disables all automatic
> linking. You can, of course, still pick which components to enable by
> checking the specific boxes.
> On Tue, Aug 11, 2015 at 7:40 AM, Engin Özkan <eozkan at uchicago.edu
> <mailto:eozkan at uchicago.edu>> wrote:
> Dear Developers,
> Using the latest phenix nightly, I observed something odd in the
> phenix.refine UI, and I thought I should report it. If one
> unchecks Automatic ligand linking, this seems to not override its
> options, as the instructions in the Options window suggest.
> Specifically, if "Automatic Ligand Linking" is unchecked, but the
> "Link metals" is checked within its Options window, metal link
> restraints are still created.
> I checked the .geo file to confirm this.
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