[phenixbb] mmCIF file must contain at least one data block

Pavel Afonine pafonine at lbl.gov
Fri Dec 18 10:07:10 PST 2015


Dave,

it looks like problem with one of the input files you use. If you send 
me all files and tell me how to reproduce the problem then I might be 
able to be more specific in diagnosing the problem.

Pavel

On 12/18/15 00:55, David Shin wrote:
> Hi all,
>
> Did you find a resolution to this problem? I just got the same error.
> What prompted it was including a new ligand that I created files 
> (.pdb, .cif, .etc)  for using eLBOW from either an .sdf file or a 
> smiles string.
>
> Thanks,
>
> Dave
>
> On Wed, Apr 22, 2015 at 11:52 AM, Pavel Afonine <pafonine at lbl.gov 
> <mailto:pafonine at lbl.gov>> wrote:
>
>     Hi Ursula,
>
>     most likely this is an admittedly obscure indication of the fact
>     that some of input files that you gave to phenix.refine is
>     corrupted in some way. If you send me all inputs (and tel how you
>     run the program) then I will try to figure out.
>
>     Pavel
>
>
>     On 4/22/15 11:33 AM, Ursula Schulze-Gahmen wrote:
>>     I am getting this thie error message
>>
>>     mmCIF file must contain at least one data block when trying to
>>     run readyset or phenixrefine
>>
>>     I cannot find anything wrong wqith my input files. What is the
>>     problem?
>>
>>     Ursula
>>
>>     -- 
>>     Ursula Schulze-Gahmen, Ph.D.
>>     Project Scientist
>>     UC Berkeley, QB3
>>     360 Stanley Hall #3220
>>     Berkeley, CA 94720-3220
>>     (510) 643 9491 <tel:%28510%29%20643%209491>
>>
>>
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