[phenixbb] a command on Phenix refine
pafonine at lbl.gov
Sun Jan 4 11:25:10 PST 2015
this error means your input PDB file contains atoms that nearly
perfectly overlap. It is best if you inspect the PDB file and resolve
Answering your question:
In phenix.refine GUI :
Refinement settings -> All parameters -> Search parameters
paste nonbonded_distance_threshold and hit Enter. In popped window
replace default 0.5 with an empty line and save.
Alternatively, you can save one line
into a file and give this file to phenix.refine along with all other
file (PDB, reflections, etc).
On 1/1/15 7:22 PM, Wind Sui wrote:
> Dear All,
> I use the graphic phenix.refine to do a refinement, and Phenix
> informed me I need to have a command
> Will you please tell me by graphic phenic.refine, how can I input this
> phenixbb mailing list
> phenixbb at phenix-online.org
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