[phenixbb] About ncs and phenix.ready_set

Oleg Sobolev osobolev at lbl.gov
Mon Oct 12 10:40:07 PDT 2015

Dear Huanwang,

1. I noticed the option main.ncs=True is no longer supported in the latest
> version (1.10.1-2155). Is it true that this option will be replaced by
> ncs_search.enabled=True from now on?
Yes, this is just rearrangement of options. The underlying functionality is
(almost) the same.

> 2. I noticed the phenix.ready_set can add hydrogens to waters. How are the
> hydrogens added to the O atoms? by the H-bonding direction? How accurate is
> it if the density is not observable?
Hopefully somebody else is more knowledgeable about this question.

Best regards,
Oleg Sobolev.

> Thanks you so much in advance.
> Regards,
> Huanwang
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