[phenixbb] 5'-phosphate group CIF files
nwmoriarty at lbl.gov
Mon Sep 21 09:44:33 PDT 2015
You have a choice. You can find (if it's there) an Chemical Component entry
that has the phosphate as part of the 3-letter code or you can find the
phosphate moiety as a separate residue. In Phenix 1.10, this will be
automatically linked and the LINK record written to the PDB output.
I can help if you desire.
Nigel W. Moriarty
Building 33R0349, Physical Biosciences Division
Lawrence Berkeley National Laboratory
Berkeley, CA 94720-8235
Phone : 510-486-5709 Email : NWMoriarty at LBL.gov
Fax : 510-486-5909 Web : CCI.LBL.gov
On Mon, Sep 21, 2015 at 9:34 AM, jens j birktoft <birktoft at nyu.edu> wrote:
> Hi everyone
> I need some suggestions for a CIF file for a 5'-phosphate moiety that is
> part of the nucleotide (CYT in this case) located at the start of a DNA
> strand (5' end) to be used in refinement in both PHENIX and COOT.
> All suggestions are appreciated.
> Jens J. Birktoft
> Structural DNA Nanotechnology
> New York University
> e-mail: birktoft at nyu.edu <jens.knold at gmail.com>; Phone: 212-749-5057
> very slow-mail: 350 Central Park West, Suite 9F, New York, NY 10025
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