[phenixbb] Autobuild

Terwilliger, Thomas Charles terwilliger at lanl.gov
Wed Apr 20 09:25:12 PDT 2016


Hi Sam,


I'm sorry for this autobuild error!  I think that this is a bug that does not show up very often.  Can you possibly send me off-list the inputs and full log file so that I can fix it?


For MR, phenix.automr has been replaced by phenix.mrage and phenix.phaser.


Thanks a lot!

-Tom T


________________________________
From: phenixbb-bounces at phenix-online.org <phenixbb-bounces at phenix-online.org> on behalf of Sam Tang <samtys0910 at gmail.com>
Sent: Wednesday, April 20, 2016 10:01 AM
To: phenixbb at phenix-online.org
Subject: [phenixbb] Autobuild

Dear colleagues

I have recently downloaded a Windows GUI version of Phenix 1.10.1-2155. When I used AutoBuild these few days it keeps turning out the following errors:

Job 1 failed:
  child process stderr output:
  command: ['phenix.autobuild', 'C:\\Users\\pcshaw\\Desktop\\NPAproc\\B13_proc\\AutoBuild_run_4_\\TEMP0\\PARAMS_1.eff', 'write_run_directory_to_file="C:\\Users\\pcshaw\\Desktop\\NPAproc\\B13_proc\\AutoBuild_run_4_\\TEMP0\\INFO_FILE_1"']
  Traceback (most recent call last):
    File "C:\Program Files\Phenix\phenix-installer-1.10.1-2155-win7vc90\build\..\modules\phenix\phenix/command_line\autobuild.py", line 228, in <module>
      run_autobuild=run_autobuild(args=sys.argv[1:])
    File "C:\Program Files\Phenix\phenix-installer-1.10.1-2155-win7vc90\modules\phenix\phenix\autosol\wizard_command_line.py", line 564, in __init__
      self.RunWizard()
    File "C:\Program Files\Phenix\phenix-installer-1.10.1-2155-win7vc90\modules\phenix\phenix\autosol\wizard_command_line.py", line 1001, in RunWizard
      self.runWizard.run()
    File "C:\Program Files\Phenix\phenix-installer-1.10.1-2155-win7vc90\modules\phenix\phenix\autosol\wizard_command_line.py", line 137, in run
      self.Wizard.Run(info='script')
    File "C:\Program Files\Phenix\phenix-installer-1.10.1-2155-win7vc90\modules\phenix\phenix\autosol\AutoBaseExtend.py", line 836, in Run
      self.DoNextMethod()
    File "C:\Program Files\Phenix\phenix-installer-1.10.1-2155-win7vc90\modules\phenix\phenix\autosol\AutoBaseExtend.py", line 1004, in DoNextMethod
      raise AssertionError, line
  AssertionError: Traceback (most recent call last):
    File "C:\Program Files\Phenix\phenix-installer-1.10.1-2155-win7vc90\modules\phenix\phenix\autosol\AutoBaseExtend.py", line 987, in DoNextMethod
      self.CarryOutBest()     # to be obtained after it is finished
    File "C:\Program Files\Phenix\phenix-installer-1.10.1-2155-win7vc90\modules\phenix\phenix\autosol\AutoBaseExtend.py", line 2147, in CarryOutBest
      getattr(self,str(self.application_method))()  # call this fn
    File "C:\Program Files\Phenix\phenix-installer-1.10.1-2155-win7vc90\modules\phenix\phenix\wizards\AutoBuild.py", line 2372, in AutoBuild_build_cycle
      self.AutoBuild_rebuild_cycle_run()
    File "C:\Program Files\Phenix\phenix-installer-1.10.1-2155-win7vc90\modules\phenix\phenix\wizards\AutoBuild.py", line 4626, in AutoBuild_rebuild_cycle_run
      refine_2fofc=refine_2fofc)
    File "C:\Program Files\Phenix\phenix-installer-1.10.1-2155-win7vc90\modules\phenix\phenix\wizards\AutoBuild.py", line 5500, in AutoBuild_resolve_with_model
      hklout=hklout,labin=labin)
  UnboundLocalError: local variable 'labin' referenced before assignment

Could I please enquire if these are due to mis-setting of parameters or in fact problems related to my recent installation?

Yet another question on my mind is, is AutoMR still supported in this Windows version? I can now no longer find it in the GUI while it used to be there in the 1.7 Mac version.

Kind regards

Sam

Biochemistry Programme, School of Life Sciences, CUHK

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