[phenixbb] phenix rosetta interface

CPMAS Chen cpmasmit at gmail.com
Fri Dec 16 11:26:26 PST 2016


Hi, All,

When I compile phenix-1.11-2567 and rosetta-bin-mac_2016.37.58930_bundle
interface, I got the following error message. Any suggestion to fix this?
Thanks!

src/core/scoring/cryst/PhenixInterface.cc:253:11: error: no matching member
function for call to 'dump_pdb'

        pose_asu.dump_pdb( pdbout , "1" );

        ~~~~~~~~~^~~~~~~~

src/core/pose/Pose.hh:1525:2: note: candidate function not viable: no known
conversion from 'char [256]' to 'std::ostream &'

      (aka 'basic_ostream<char> &') for 1st argument

        dump_pdb(

        ^

src/core/pose/Pose.hh:1518:2: note: candidate function not viable: requires
single argument 'file_name', but 2 arguments were provided

        dump_pdb(std::string const & file_name) const;

        ^

src/core/pose/Pose.hh:1521:2: note: candidate function not viable: requires
single argument 'out', but 2 arguments were provided

        dump_pdb(std::ostream & out) const;

        ^

src/core/scoring/cryst/PhenixInterface.cc:916:11: error: no matching member
function for call to 'dump_pdb'

        pose_asu.dump_pdb( buffer , "1" );

        ~~~~~~~~~^~~~~~~~

src/core/pose/Pose.hh:1525:2: note: candidate function not viable: no known
conversion from 'char [256]' to 'std::ostream &'

      (aka 'basic_ostream<char> &') for 1st argument

        dump_pdb(

        ^

src/core/pose/Pose.hh:1518:2: note: candidate function not viable: requires
single argument 'file_name', but 2 arguments were provided

        dump_pdb(std::string const & file_name) const;

        ^

src/core/pose/Pose.hh:1521:2: note: candidate function not viable: requires
single argument 'out', but 2 arguments were provided

        dump_pdb(std::ostream & out) const;

        ^

2 errors generated.

scons: ***
[build/src/release/macos/16.1/64/x86/clang/8.0/python/core/scoring/cryst/PhenixInterface.os]
Error 1

scons: building terminated because of errors.



Thanks!

-- 

***************************************************

Charles Chen

Research Associate

University of Pittsburgh School of Medicine

Department of Anesthesiology

******************************************************
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