[phenixbb] phenix install error on linux

[Billy Poon]

Hi Min,

Can you run install again, but add the --verbose flag, and send the output
log? Also, can you tell me which linux distribution and version you are
running. Thanks!

--
Billy K. Poon
Research Scientist, Molecular Biophysics and Integrated Bioimaging
Lawrence Berkeley National Laboratory
1 Cyclotron Road, M/S 33R0345
Berkeley, CA 94720
Tel: (510) 486-5709
Fax: (510) 486-5909
Web: https://phenix-online.org

On Thu, Feb 11, 2016 at 1:07 AM, Min Zheng <m_zhen01 at uni-muenster.de> wrote:

> Dear All,
>
> I am installing phenix, and get the following error:
>
>
> ==========================================================================
>                           Phenix Installation
>
>                           version: 1.10.1-2155
>                      machine type: intel-linux-2.6-x86_64
>                        OS version: 3.11.10-29-default
>                       destination: /home/m/m_zhen01/phenix-1.10.1-2155
>                   # of processors: 20
>
> =========================================================================
>
> Configuring Phenix components...
>
>
> Traceback (most recent call last):
>   File "./bin/install.py", line 262, in <module>
>     installer(sys.argv[1:]).install()
>   File
>
> "/nfsexp/homes/m_zhen01/phenix-installer-1.10.1-2155-intel-linux-2.6-x86_64-centos5/lib/libtbx/auto_build/install_distribution.py",
>   line 185, in install
>     self.install_from_binary()
>   File
>
> "/nfsexp/homes/m_zhen01/phenix-installer-1.10.1-2155-intel-linux-2.6-x86_64-centos5/lib/libtbx/auto_build/install_distribution.py",
>   line 295, in install_from_binary
>     self.reconfigure(log=log)
>   File
>
> "/nfsexp/homes/m_zhen01/phenix-installer-1.10.1-2155-intel-linux-2.6-x86_64-centos5/lib/libtbx/auto_build/install_distribution.py",
>   line 460, in reconfigure
>     call(args=args, log=log, verbose=self.options.verbose)
>   File
>
> "/nfsexp/homes/m_zhen01/phenix-installer-1.10.1-2155-intel-linux-2.6-x86_64-centos5/lib/libtbx/auto_build/installer_utils.py",
>   line 81, in call
>     raise RuntimeError("Call to '%s' failed with exit code %d" % (args,
> rc))
> RuntimeError: Call to '/home/m/m_zhen01/phenix-1.10.1-2155/base/bin/python
>
> /home/m/m_zhen01/phenix-1.10.1-2155/modules/cctbx_project/libtbx/configure.py
> --current_working_directory /home/m/m_zhen01/phenix-1.10.1-2155/build
> --command_version_suffix 1.10.1-2155 phenix phaser solve_resolve labelit'
> failed with exit code 1
>
> m_zhen01 at LIBRA
> :~/phenix-installer-1.10.1-2155-intel-linux-2.6-x86_64-centos5>
> /home/m/m_zhen01/phenix-1.10.1-2155/base/bin/python
> Traceback (most recent call last):
>   File "/usr/lib64/python2.7/site.py", line 564, in <module>
>     main()
>   File "/usr/lib64/python2.7/site.py", line 546, in main
>     known_paths = addusersitepackages(known_paths)
>   File "/usr/lib64/python2.7/site.py", line 276, in addusersitepackages
>     user_site = getusersitepackages(kind)
>   File "/usr/lib64/python2.7/site.py", line 244, in getusersitepackages
>     user_base = getuserbase() # this will also set USER_BASE
>   File "/usr/lib64/python2.7/site.py", line 230, in getuserbase
>     from sysconfig import get_config_var
>   File "/usr/lib64/python2.7/sysconfig.py", line 10, in <module>
>     'stdlib': '{base}/'+sys.lib+'/python{py_version_short}',
> AttributeError: 'module' object has no attribute 'lib'
>
>
> Thanks in advance,
> Min
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