[phenixbb] Problem refining structure, error message

[Singh, Bishal]

Hi Nat,
Open your PDB file in text, remove information of Li in 'remark', save the  pdb file and use it for refinement. This should work.
Best,
Bishal

Bishal Singh, PhD student
German Cancer Research Center (DKFZ)
University of Heidelberg
Germany


From: phenixbb-bounces at phenix-online.org [phenixbb-bounces at phenix-online.org] On Behalf Of Natalia Ketaren [nketaren at mail.rockefeller.edu]
Sent: Friday, February 19, 2016 2:00 AM
To: phenixbb at phenix-online.org
Subject: [phenixbb] Problem refining structure, error message

Hello,

I’m building a structure at the moment, and I have since removed lithium ions from structure. However, when I go to refine using phenix, I get the error message:
“No atom selected: name LI and Chain F and rename LI resseq 8”

I’ve tried using earlier files, prior to my addition of lithium ions and I still get the same error message. I’m using Phenix version 1.10.1-2155-000
Could anyone help me overcome this error message?

Cheers,

Nat

_____________________________
Natalia E. Ketaren, PhD
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Rout Laboratory
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