[phenixbb] phenix fails to configure on fedora 20
Dr. Robert Oeffner
rdo20 at cam.ac.uk
Tue Nov 1 10:32:01 PDT 2016
Version 1.10 is quite old and there have been several bug fixes and new features since then. We’re just about to release version 1.11 so the current nightly builds on the website should be quite stable. If you detect otherwise we would be interested to hear back.
From: abhisek Mondal
Sent: Tuesday, November 1, 2016 5:07 PM
To: rdo20 at cam.ac.uk ; phenixbb at phenix-online.org
Subject: RE: [phenixbb] phenix fails to configure on fedora 20
But, my concern is, when I tried to install the same version in my workstation it worked cool.
Is this some sort of issue with my laptop ?
Nightly builds are beta right ? Won't it cause any stability issue ?
On Nov 1, 2016 3:07 PM, <rdo20 at cam.ac.uk> wrote:
Have you tried one of the recent nightly builds or the centos5 version?
Sent from my Windows 10 phone
Robert Oeffner, Ph.D.
Research Associate, The Read Group
Department of Haematology,
Cambridge Institute for Medical Research
University of Cambridge
Cambridge Biomedical Campus
Wellcome Trust/MRC Building
Cambridge CB2 0XY
tel: +44(0)1223 763234
mobile: +44(0)7712 887162
From: abhisek Mondal
Sent: 01 November 2016 07:39
To: phenixbb at phenix-online.org
Subject: [phenixbb] phenix fails to configure on fedora 20
I'm using Fedora 20 on a 4 core laptop. When I tried to install phenix it gave following error.
Same version installed fine in my workstation but keep failing here.
Please help me out here.
[root at viralhost phenix-installer-1.10.1-2155-intel-linux-2.6-x86_64-centos6]# ./install
machine type: intel-linux-2.6
OS version: 3.19.8-100.fc20.i686
# of processors: 4
Configuring Phenix components...
Traceback (most recent call last):
File "./bin/install.py", line 262, in <module>
File "/home/abhisek/phenix-installer-1.10.1-2155-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/install_distribution.py", line 185, in install
File "/home/abhisek/phenix-installer-1.10.1-2155-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/install_distribution.py", line 295, in install_from_binary
File "/home/abhisek/phenix-installer-1.10.1-2155-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/install_distribution.py", line 460, in reconfigure
call(args=args, log=log, verbose=self.options.verbose)
File "/home/abhisek/phenix-installer-1.10.1-2155-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/installer_utils.py", line 81, in call
raise RuntimeError("Call to '%s' failed with exit code %d" % (args, rc))
RuntimeError: Call to '/usr/local/phenix-1.10.1-2155/base/bin/python /usr/local/phenix-1.10.1-2155/modules/cctbx_project/libtbx/configure.py --current_working_directory /usr/local/phenix-1.10.1-2155/build --command_version_suffix 1.10.1-2155 phenix phaser solve_resolve labelit' failed with exit code 126
Structural Biology and Bioinformatics Division
CSIR-Indian Institute of Chemical Biology
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