[phenixbb] Crashing Phenix

Billy Poon bkpoon at lbl.gov
Tue Nov 22 13:57:39 PST 2016


Hi Reza,

Do you have the LANG or LC_ALL environment variables set? If you have LANG
can you try setting LC_ALL to the same value? Also, make sure that there is
a "UTF-8" somewhere. So for English (U.S.), LC_ALL should be set to
en_US.UTF-8.

--
Billy K. Poon
Research Scientist, Molecular Biophysics and Integrated Bioimaging
Lawrence Berkeley National Laboratory
1 Cyclotron Road, M/S 33R0345
Berkeley, CA 94720
Tel: (510) 486-5709
Fax: (510) 486-5909
Web: https://phenix-online.org

On Tue, Nov 22, 2016 at 3:38 PM, Reza Khayat <rkhayat at ccny.cuny.edu> wrote:

> Hi,
>
>
> I recently installed phenix-1.11.1-2575 (CentOS 5 flavor) and am getting
> the following crashes when trying to launch the GUI.
>
> 15:31:23: Cannot set locale to language "English".
> 15:31:23: locale 'en_GB' cannot be set.
>
> phenix-1.10.1-2155 (on the same system) also gives me a locale 'en_GB'
> error but the GUI launches and I can run programs.
>
>
> Any suggestions on how to fix this problem? Thanks.
>
>
> Best wishes,
> Reza
>
> Reza Khayat, PhD
> Assistant Professor
> City College of New York
> Department of Chemistry
> New York, NY 10031
> ------------------------------
> *From:* phenixbb-bounces at phenix-online.org <phenixbb-bounces at phenix-
> online.org> on behalf of Pavel Afonine <pafonine at lbl.gov>
> *Sent:* Wednesday, August 3, 2016 7:39 AM
> *To:* phenixbb at phenix-online.org
> *Subject:* Re: [phenixbb] Realspace refinement
>
>
> Hi Reza,
> yes, it does.
>
> Pavel
>
> On 8/1/16 04:16, Reza Khayat wrote:
>
> Hi,
>
>
>
> Does realspace refinement consider temperature factors during refinement?
> Thanks.
>
>
>
> Best wishes,
> Reza
>
>
>
> Reza Khayat, PhD
>
> Assistant Professor
>
> Department of Chemistry
>
> City College of New York
>
> 85 Saint Nicholas Terrace, CDI 2.318
>
> New York, NY 10031
>
> http://www.khayatlab.org/
>
> 212-650-6070
>
>
>
>
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