[phenixbb] Phenix installation on manjaro

Murpholino Peligro murpholinox at gmail.com
Mon Feb 6 16:04:38 PST 2017


[eva03 phenix-installer-dev-2666-intel-linux-2.6-x86_64-centos5]#
/usr/local/phenix-dev-2666/base/bin/python
/usr/local/phenix-dev-2666/modules/cctbx_project/libtbx/configure.py
--current_working_directory /usr/local/phenix-dev-2666/build
--command_version_suffix dev-2666 phenix phaser solve_resolve labelit dials
xia2 iota prime
Traceback (most recent call last):
  File
"/usr/local/phenix-dev-2666/modules/cctbx_project/libtbx/configure.py",
line 22, in <module>
    if not run():
  File
"/usr/local/phenix-dev-2666/modules/cctbx_project/libtbx/configure.py",
line 17, in run
    libtbx.env_config.cold_start(sys.argv)
  File
"/usr/local/phenix-dev-2666/modules/cctbx_project/libtbx/env_config.py",
line 2294, in cold_start
    " --current_working_directory %s" % show_string(build_path))
RuntimeError: Not equivalent to the current working directory:
--current_working_directory "/usr/local/phenix-dev-2666/build"

I am trying the centos5 version. I'll try the centos6 ...

2017-02-03 15:39 GMT-06:00 Billy Poon <bkpoon at lbl.gov>:

> Hi,
>
> Can you provide the output for
>
> '/usr/local/phenix-dev-2666/base/bin/python /usr/local/phenix-dev-2666/
> modules/cctbx_project/libtbx/configure.py --current_working_directory
> /usr/local/phenix-dev-2666/build --command_version_suffix dev-2666 phenix
> phaser solve_resolve labelit dials xia2 iota prime'
>
> That is the command that is failing.
>
> Also, which installer are you using? The CentOS 6 installer is generally
> more compatible with more recent versions.
>
> --
> Billy K. Poon
> Research Scientist, Molecular Biophysics and Integrated Bioimaging
> Lawrence Berkeley National Laboratory
> 1 Cyclotron Road, M/S 33R0345
> Berkeley, CA 94720
> Tel: (510) 486-5709
> Fax: (510) 486-5909
> Web: https://phenix-online.org
>
> On Thu, Feb 2, 2017 at 2:02 PM, Murpholino Peligro <murpholinox at gmail.com>
> wrote:
>
>> Dear all.
>> has anyone been lucky with the installation of phenix in manjaro or any
>> other archlinux-based distribution?
>>
>> Thanks
>> Ps. Error looks like http://pastebin.com/WzwrbK8W
>>
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>>
>
>
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