[phenixbb] sculptor modifications
Pavel Afonine
pafonine at lbl.gov
Tue Jun 20 15:26:41 PDT 2017
Hi Emily,
simplest and quickest way would be to load both models into Pymol (or
Coot) and color one read and the other one blue (or any other
combination of colors of your preference!). That will give you a quick
idea about changes in coordinates (note, it may change B factors too, as
far as I know..).
Also,
phenix.pdb.hierarchy model.pdb
will give you counts of chains, residues, atoms, etc.
Pavel
On 6/20/17 14:44, Emilia C. Arturo (Emily) wrote:
> Hello All,
>
> Is there a way to identify quickly the changes to a model that
> Sculptor has made?
>
> I am running the Phenix GUI to use Sculptor. I have read through the
> out-put log file, and understand (mostly) the sculpt protocol as it
> relates to the circumstances under which modifications to main chain
> or side chains are made, but it would be nice to see (in a list
> format, perhaps) what changes (if any...) were made.
>
> Regards,
> Emily.
>
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