[phenixbb] Error running ERRASER

[Tristan Croll]

This would appear to be related to a long-standing bug in Python 2.7: 
see https://bugs.python.org/issue9400. Whatever the *actual* error is is 
being obscured by the fact that the error doesn't get properly handed 
back from the sub-process. Looks like it might be somewhat non-trivial 
to get to the bottom of.

On 2017-05-12 18:13, Eric Montemayor wrote:
> Has anybody encountered this error when running ERRASER in Phenix?  If
> so, any suggestions for how to fix this would be greatly appreciated!
> 
> --------------------------------------------------------------------------
> 
> TypeError : ('__init__() takes at least 3 arguments (1 given)', <class
> 'subprocess.CalledProcessError'>, ())
> 
> Traceback (most recent call last):
>   File
> "/opt/sbgrid/i386-mac/phenix/1.11.1-2575/phenix-1.11.1-2575/modules/phenix/wxGUI2/App.py",
> line 784, in OnTimer
>     self.run_manager.update(update_backgrounded=False)
>   File
> "/opt/sbgrid/i386-mac/phenix/1.11.1-2575/phenix-1.11.1-2575/modules/phenix/wxGUI2/ProcessControl.py",
> line 213, in update
>     process.update()
>   File
> "/opt/sbgrid/i386-mac/phenix/1.11.1-2575/phenix-1.11.1-2575/modules/phenix/wxGUI2/ProcessControl.py",
> line 136, in update
>     self._process.update()
>   File
> "/opt/sbgrid/i386-mac/phenix/1.11.1-2575/phenix-1.11.1-2575/modules/cctbx_project/libtbx/runtime_utils.py",
> line 306, in update
>     (error, traceback_info) = easy_pickle.load(self.error_file)
>   File
> "/opt/sbgrid/i386-mac/phenix/1.11.1-2575/phenix-1.11.1-2575/modules/cctbx_project/libtbx/easy_pickle.py",
> line 82, in load
>     return cPickle.loads(_open(file_name, "rb").read())
> TypeError: ('__init__() takes at least 3 arguments (1 given)', <class
> 'subprocess.CalledProcessError'>, ())
> 
> --------------------------------------------------------------------------
> 
> --
> 
> Eric J. Montemayor, Ph.D.
> Associate Scientist
> University of Wisconsin-Madison
> 145 Biochemistry Laboratories
>  433 Babcock Drive
>  Madison, WI 53706
> 512.784.5981
> http://about.me/montemayor [1]
> https://www.linkedin.com/in/ericmontemayor [2]
> 
> 
> Links:
> ------
> [1] http://about.me/montemayor
> [2] https://www.linkedin.com/pub/eric-montemayor/63/121/98b
> 
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