[phenixbb] Error running ERRASER

[Eric Montemayor]

Thanks Tristan,

I had a few failed jobs in my "job history" tab that were still marked as
running.  I deleted them and now ERRASER works again.  So hopefully that
was (somehow) the issue.

-Eric



On Fri, May 12, 2017 at 2:59 PM, Tristan Croll <tic20 at cam.ac.uk> wrote:

> This would appear to be related to a long-standing bug in Python 2.7: see
> https://bugs.python.org/issue9400. Whatever the *actual* error is is
> being obscured by the fact that the error doesn't get properly handed back
> from the sub-process. Looks like it might be somewhat non-trivial to get to
> the bottom of.
>
>
> On 2017-05-12 18:13, Eric Montemayor wrote:
>
>> Has anybody encountered this error when running ERRASER in Phenix?  If
>> so, any suggestions for how to fix this would be greatly appreciated!
>>
>> ------------------------------------------------------------
>> --------------
>>
>> TypeError : ('__init__() takes at least 3 arguments (1 given)', <class
>> 'subprocess.CalledProcessError'>, ())
>>
>> Traceback (most recent call last):
>>   File
>> "/opt/sbgrid/i386-mac/phenix/1.11.1-2575/phenix-1.11.1-2575/
>> modules/phenix/wxGUI2/App.py",
>> line 784, in OnTimer
>>     self.run_manager.update(update_backgrounded=False)
>>   File
>> "/opt/sbgrid/i386-mac/phenix/1.11.1-2575/phenix-1.11.1-2575/
>> modules/phenix/wxGUI2/ProcessControl.py",
>> line 213, in update
>>     process.update()
>>   File
>> "/opt/sbgrid/i386-mac/phenix/1.11.1-2575/phenix-1.11.1-2575/
>> modules/phenix/wxGUI2/ProcessControl.py",
>> line 136, in update
>>     self._process.update()
>>   File
>> "/opt/sbgrid/i386-mac/phenix/1.11.1-2575/phenix-1.11.1-2575/
>> modules/cctbx_project/libtbx/runtime_utils.py",
>> line 306, in update
>>     (error, traceback_info) = easy_pickle.load(self.error_file)
>>   File
>> "/opt/sbgrid/i386-mac/phenix/1.11.1-2575/phenix-1.11.1-2575/
>> modules/cctbx_project/libtbx/easy_pickle.py",
>> line 82, in load
>>     return cPickle.loads(_open(file_name, "rb").read())
>> TypeError: ('__init__() takes at least 3 arguments (1 given)', <class
>> 'subprocess.CalledProcessError'>, ())
>>
>> ------------------------------------------------------------
>> --------------
>>
>> --
>>
>> Eric J. Montemayor, Ph.D.
>> Associate Scientist
>> University of Wisconsin-Madison
>> 145 Biochemistry Laboratories
>>  433 Babcock Drive
>>  Madison, WI 53706
>> 512.784.5981
>> http://about.me/montemayor [1]
>> https://www.linkedin.com/in/ericmontemayor [2]
>>
>>
>> Links:
>> ------
>> [1] http://about.me/montemayor
>> [2] https://www.linkedin.com/pub/eric-montemayor/63/121/98b
>>
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>>
>
>


-- 
Eric J. Montemayor, Ph.D.
Associate Scientist
University of Wisconsin-Madison
145 Biochemistry Laboratories
433 Babcock Drive
Madison, WI 53706
512.784.5981
http://about.me/montemayor
https://www.linkedin.com/in/ericmontemayor
<https://www.linkedin.com/pub/eric-montemayor/63/121/98b>
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