[phenixbb] refine error message
eozkan at uchicago.edu
Mon Sep 18 09:02:53 PDT 2017
I recently had a few errors of such, and while I can't remember which
Phenix program spitted it out (Phaser or phenix.refine), the issue was
my models from MODELLER. Simply deleting hydrogens by running
phenix.reduce -Trim insertpdbname.pdb >newpdbname.pdb
on the coordinate file fixes it for me.
I might be way off with your issue, but this is easy enough to try.
On 9/18/17 10:57 AM, Jiemin Zhao wrote:
> I got an error message when I try to refine a molecular replacement
> result. It says Fatal problems interpreting model file: Number of
> atoms with unknown nonbonding energy type symbols: 18 Please edit the
> model file to resolve the problems and/or supply a CIF file with
> matching restraint definitions, along with apply-cif-modification and
> apply-cif-link parameter definitions if necessary.
> Could you help me with this problem?
> Best regards,
> phenixbb mailing list
> phenixbb at phenix-online.org
> Unsubscribe: phenixbb-leave at phenix-online.org
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