[phenixbb] covalently linked ligand
Muhammad Bashir Khan
mbk at ualberta.ca
Tue Apr 14 15:59:31 PDT 2020
Hi All;
I have a protein molecule and a ligand structure. I want to make a covalent
bond between the ligand and protein molecule, could somebody explain to me
how I can do that using phenix.
I used the
" *phenix.ligand_linking pdb_file_name" commond*
It creates
apply_link.def
and
data_link.cif
I did refine the structure again giving the above file as well but did not
see any covalent bond created between the protein and ligand.
Thanks for your help
Bashir
--
------------------------------------------------------
Muhammad Bashir Khan, Ph.D.
Research Associate
Department of Biochemistry
Medical Science Bldg.
Lab 3-27
University of Alberta
Edmonton AB, T6G 2H7
Phone: 780-492-4577-
e-mail: mbk at ualberta.ca <cbrooks1 at ualberta.ca>
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