[phenixbb] Phenix installation on macOS 14 Sonoma

Klureza, Maggie mklureza at g.harvard.edu
Sun Dec 31 08:37:35 PST 2023


Hi all,

Reviving this thread (or trying to, anyway - TBD if I can successfully
reply to a thread begun before I'd joined the phenixbb list!), I recently
updated my Mac OS to 14/Sonoma, and am now also having issues getting
Phenix to work.

As directed on the installers page
<https://phenix-online.org/download/phenix/release/>, I downloaded the
supplied fix <https://phenix-online.org/download/sonoma_fix.tar.gz>,
extracted the tarball, and ran that code as `sudo
Downloads/sonoma_fix/fix_wxpython.sh /Applications/phenix-1.19.2-4158`.
This was the resulting output/error I got:

Password:
Removing old version of wxPython
================================
Downloads/sonoma_fix/fix_wxpython.sh: line 36: ./bin/conda.exe: No such
file or directory

Installing new version of wxPython
==================================
Downloads/sonoma_fix/fix_wxpython.sh: line 42: ./bin/conda.exe: No such
file or directory

The wxPython package has been updated in /Applications/phenix-1.20.1-4487.


Sure enough, when I went to my phenix installation and looked in
conda_base/bin, there was no file named `conda.exe` present. This was true
for both my prior installation (phenix-1.19.2-4158) and when I tried a
newly downloaded version (phenix-1.20.1-4487).

Can anyone tell me how I get that conda.exe file included with the Phenix
download/how else I might be able to run Phenix with this OS?

(I sent an email about this to help at phenix-online.org before thinking to
hunt through the phenixbb archive, so apologies to whoever checks that
email and is getting this message twice!)

Many thanks,
Maggie
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