[phenixbb] Issue resorting water chain
Victor Rangel
victorlopesrangel92 at gmail.com
Fri May 5 06:31:36 PDT 2023
Dear bb,
I'm using phenix.sort_hetatms to sort my water molecule chain based on
their bfactor. My macromolecule and water chains are separated, and I'd
very much like them to remain so.
When adding *preserve_chain_id=True*, the program outputs: *"Warning: no
corresponding macromolecule chain match for C 1"*. The program still
writes the output pdb, but it changes the water chain name from "C" to "X",
and it does not sort them by bfactor. I'm using Phenix 1.20.1-4487
My command is:
*phenix.sort_hetatms file_name="refine.pdb"
output_file="resorted_refine.pdb" preserve_chain_id=True
sort_waters_by=*b_iso*
Not sure where my mistake is. Any suggestions?
Best,
Victor
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