[phenixbb] Phenix installation on macOS 14 Sonoma

[Kizziah, James]

Hi Billy,

Thanks for your help. I’m using the v1.20.1-4487 graphical installer currently listed for macOS on the main download page: https://phenix-online.org/download/phenix/release/

Best,
James


From: Billy Poon <BKPoon at lbl.gov>
Date: Thursday, September 28, 2023 at 11:24 AM
To: Kizziah, James <kizziah4 at uab.edu>
Cc: phenixbb at phenix-online.org <phenixbb at phenix-online.org>
Subject: Re: [phenixbb] Phenix installation on macOS 14 Sonoma
Hi James,

Which installer are you using (version and graphical or command-line)? I have not updated my laptop to Sonoma yet, so I am not able to test.

--
Billy K. Poon
Research Scientist, Molecular Biophysics and Integrated Bioimaging
Lawrence Berkeley National Laboratory
1 Cyclotron Road, M/S 33R0345
Berkeley, CA 94720
Fax: (510) 486-5909
Web: https://phenix-online.org<https://phenix-online.org/>


On Thu, Sep 28, 2023 at 8:54 AM Kizziah, James <kizziah4 at uab.edu<mailto:kizziah4 at uab.edu>> wrote:
Hi all,


I am having trouble getting Phenix to open on a new mac.

I downloaded the latest official release of the point-and-click installer, ran xattr -c on it, and installed without issue. Initially, I can create the first project directory (or recreate it if I remove the .phenix directory), but then I get a notice that another instance of Phenix is running with the associated PID. If I continue anyway, python quits unexpectedly, and if Phenix is opened in the command line, this reply is given:

“python[9678:116756] It's not legal to call -layoutSubtreeIfNeeded on a view which is already being laid out.  If you are implementing the view's -layout method, you can call -[super layout] instead. Break on void _NSDetectedLayoutRecursion(void) to debug.  This will be logged only once.  This may break in the future.



[3]    segmentation fault  phenix”



However, the PID for this supposed other instance doesn’t exist. This occurs every time Phenix is run from Applications or in the command line, even after restarting the laptop (without resuming programs) or deleting and reinstalling Phenix.



Any ideas how to solve this problem?



Thanks,

James

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