[phenixbb] Define bond between O3' of a nucleotide to P of 3DR HETATM ligand (abasic nucleotide)

[Nigel Moriarty]

Mark

You can use edits (for a one of) or cif_links.

Coot can not display all links that Phenix uses. We are working on a
display for this.

Cheers

Nigel

---
Nigel W. Moriarty
Building 33R0349, Molecular Biophysics and Integrated Bioimaging
Lawrence Berkeley National Laboratory
Berkeley, CA 94720-8235
Email : NWMoriarty at LBL.gov
Web  : CCI.LBL.gov
ORCID : orcid.org/0000-0001-8857-9464


On Fri, Feb 23, 2024 at 5:29 AM Mark Saper <saper at umich.edu> wrote:

> I need to create a phosphodiester bond between O3’ of a DNA nucleotide and
> P of a 3DR HETATM ligand (a modified nucleotide).  I also need to delete
> O3P of the 3DR nucleotide.  How can I create this restraint?
>
> Also, how can I get COOT to display this bond?
>
> Thanks,
> Mark
> _____________________
> *Mark A. Saper, Ph.D.*
> Dept of Microbiology and Molecular Genetics
> Hebrew University Faculty of Medicine
> saper at umich.edu  |  +972 52 815-0480
>
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