<BODY contentEditable=true onload=parent.init()><P>Yes. </P>
<P>It is more robust and used in the so called MZ protocol. It has a large radius of convergence.</P>
<P>Peter</P>
<P><BR><BR>----- Original Message ----- <BR>From: Jianghai Zhu <jzhu@cbr.med.harvard.edu> <BR>Date: Sunday, March 25, 2007 6:25 pm <BR>Subject: Re: [phenixbb] ls_wunit_k1 <BR>To: PHENIX user mailing list <phenixbb@phenix-online.org> <BR><BR>> The default target for rigid body is LS from "phenix.refine --show- <BR>> <BR>> defaults=all". Is this intentional? <BR>> <BR>> Jianghai <BR>> <BR>> +++++++++++++++++++++++++++++++ <BR>> Jianghai Zhu, Ph.D <BR>> CBR Institute for Biomedical Research <BR>> Department of Pathology <BR>> Harvard Medical School <BR>> 200 Longwood Ave., Boston, MA 02115 <BR>> Ph: 617-278-3211 <BR>> Fx: 618-278-3232 <BR>> +++++++++++++++++++++++++++++++ <BR>> <BR>> <BR>> <BR>> On Mar 25, 2007, at 10:14 PM, Jianghai Zhu wrote: <BR>> <BR>> > I checked my log file and didn't find "automatic adjustment". <BR>> My <BR>
> > main target is mlhl. However, the target function for rigid <BR>> body <BR>> > is ls_wunit_k1. I didn't choose that. Is LS the default for <BR>> rigid <BR>> > body? <BR>> > <BR>> > Jianghai <BR>> > <BR>> > +++++++++++++++++++++++++++++++ <BR>> > Jianghai Zhu, Ph.D <BR>> > CBR Institute for Biomedical Research <BR>> > Department of Pathology <BR>> > Harvard Medical School <BR>> > 200 Longwood Ave., Boston, MA 02115 <BR>> > Ph: 617-278-3211 <BR>> > Fx: 618-278-3232 <BR>> > +++++++++++++++++++++++++++++++ <BR>> > <BR>> > <BR>> > <BR>> > On Mar 25, 2007, at 10:00 PM, Ralf W. Grosse-Kunstleve wrote: <BR>> > <BR>> >>> You are right. Somehow, the default target function in <BR>> >>> refinement.bulk_solvent_and_scale is LS, not ML. <BR>> >> <BR>
> >> The default (phenix.refine --show-defaults=all) is actually ml. <BR>> >> However, if the main target is set to ls the bulk_solvent_and_scale <BR>> >> target is automatically reset to ls, too. There should be <BR>> >> corresponding <BR>> >> messages in the log file ("automatic adjustment"). <BR>> >> Ralf <BR>> >> _______________________________________________ <BR>> >> phenixbb mailing list <BR>> >> phenixbb@phenix-online.org <BR>> >> http://www.phenix-online.org/mailman/listinfo/phenixbb <BR>> > <BR>> > _______________________________________________ <BR>> > phenixbb mailing list <BR>> > phenixbb@phenix-online.org <BR>> > http://www.phenix-online.org/mailman/listinfo/phenixbb <BR>> <BR>> </P></BODY>