<BODY contentEditable=true onload=parent.init()><P>I have seen that as well, not sure why that is. I guess it has to do with stability issues. Not sure if you can enforce the use of an ML target there.</P>
<P>Peter</P>
<P> </P>
<P><BR><BR>----- Original Message ----- <BR>From: Jianghai Zhu <jzhu@cbr.med.harvard.edu> <BR>Date: Sunday, March 25, 2007 7:14 pm <BR>Subject: Re: [phenixbb] ls_wunit_k1 <BR>To: PHENIX user mailing list <phenixbb@phenix-online.org> <BR><BR>> All right. The target for my TLS is also LS. Is that intentional <BR>> too? <BR>> Jianghai <BR>> <BR>> +++++++++++++++++++++++++++++++ <BR>> Jianghai Zhu, Ph.D <BR>> CBR Institute for Biomedical Research <BR>> Department of Pathology <BR>> Harvard Medical School <BR>> 200 Longwood Ave., Boston, MA 02115 <BR>> Ph: 617-278-3211 <BR>> Fx: 618-278-3232 <BR>> +++++++++++++++++++++++++++++++ <BR>> <BR>> <BR>> <BR>> On Mar 25, 2007, at 10:55 PM, Petrus H Zwart wrote: <BR>> <BR>> > Yes. <BR>> > <BR>> > It is more robust and used in the so called MZ protocol. It has <BR>> a <BR>> > large radius of convergence. <BR>> > <BR>
> > Peter <BR>> > <BR>> > <BR>> > <BR>> > ----- Original Message ----- <BR>> > From: Jianghai Zhu <jzhu@cbr.med.harvard.edu> <BR>> > Date: Sunday, March 25, 2007 6:25 pm <BR>> > Subject: Re: [phenixbb] ls_wunit_k1 <BR>> > To: PHENIX user mailing list <phenixbb@phenix-online.org> <BR>> > <BR>> > > The default target for rigid body is LS from "phenix.refine -- <BR>> show- <BR>> > > <BR>> > > defaults=all". Is this intentional? <BR>> > > <BR>> > > Jianghai <BR>> > > <BR>> > > +++++++++++++++++++++++++++++++ <BR>> > > Jianghai Zhu, Ph.D <BR>> > > CBR Institute for Biomedical Research <BR>> > > Department of Pathology <BR>> > > Harvard Medical School <BR>> > > 200 Longwood Ave., Boston, MA 02115 <BR>> > > Ph: 617-278-3211 <BR>> > > Fx: 618-278-3232 <BR>
> > > +++++++++++++++++++++++++++++++ <BR>> > > <BR>> > > <BR>> > > <BR>> > > On Mar 25, 2007, at 10:14 PM, Jianghai Zhu wrote: <BR>> > > <BR>> > > > I checked my log file and didn't find "automatic adjustment". <BR>> > > My <BR>> > > > main target is mlhl. However, the target function for rigid <BR>> > > body <BR>> > > > is ls_wunit_k1. I didn't choose that. Is LS the default for <BR>> > > rigid <BR>> > > > body? <BR>> > > > <BR>> > > > Jianghai <BR>> > > > <BR>> > > > +++++++++++++++++++++++++++++++ <BR>> > > > Jianghai Zhu, Ph.D <BR>> > > > CBR Institute for Biomedical Research <BR>> > > > Department of Pathology <BR>> > > > Harvard Medical School <BR>> > > > 200 Longwood Ave., Boston, MA 02115 <BR>
> > > > Ph: 617-278-3211 <BR>> > > > Fx: 618-278-3232 <BR>> > > > +++++++++++++++++++++++++++++++ <BR>> > > > <BR>> > > > <BR>> > > > <BR>> > > > On Mar 25, 2007, at 10:00 PM, Ralf W. Grosse-Kunstleve wrote: <BR>> > > > <BR>> > > >>> You are right. Somehow, the default target function in <BR>> > > >>> refinement.bulk_solvent_and_scale is LS, not ML. <BR>> > > >> <BR>> > > >> The default (phenix.refine --show-defaults=all) is actually ml. <BR>> > > >> However, if the main target is set to ls the <BR>> > bulk_solvent_and_scale <BR>> > > >> target is automatically reset to ls, too. There should be <BR>> > > >> corresponding <BR>> > > >> messages in the log file ("automatic adjustment"). <BR>> > > >> Ralf <BR>
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