<HTML><BODY style="word-wrap: break-word; -khtml-nbsp-mode: space; -khtml-line-break: after-white-space; ">All right. The target for my TLS is also LS. Is that intentional too?<DIV><BR class="khtml-block-placeholder"></DIV><DIV>Jianghai</DIV><DIV><BR><DIV> <SPAN class="Apple-style-span" style="border-collapse: separate; border-spacing: 0px 0px; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; text-align: auto; -khtml-text-decorations-in-effect: none; text-indent: 0px; -apple-text-size-adjust: auto; text-transform: none; orphans: 2; white-space: normal; widows: 2; word-spacing: 0px; "><SPAN class="Apple-style-span" style="border-collapse: separate; border-spacing: 0px 0px; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; text-align: auto; -khtml-text-decorations-in-effect: none; text-indent: 0px; -apple-text-size-adjust: auto; text-transform: none; orphans: 2; white-space: normal; widows: 2; word-spacing: 0px; "><SPAN class="Apple-style-span" style="border-collapse: separate; border-spacing: 0px 0px; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; text-align: auto; -khtml-text-decorations-in-effect: none; text-indent: 0px; -apple-text-size-adjust: auto; text-transform: none; orphans: 2; white-space: normal; widows: 2; word-spacing: 0px; "><SPAN class="Apple-style-span" style="border-collapse: separate; border-spacing: 0px 0px; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; text-align: auto; -khtml-text-decorations-in-effect: none; text-indent: 0px; -apple-text-size-adjust: auto; text-transform: none; orphans: 2; white-space: normal; widows: 2; word-spacing: 0px; "><SPAN class="Apple-style-span" style="border-collapse: separate; border-spacing: 0px 0px; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; text-align: auto; -khtml-text-decorations-in-effect: none; text-indent: 0px; -apple-text-size-adjust: auto; text-transform: none; orphans: 2; white-space: normal; widows: 2; word-spacing: 0px; "><SPAN class="Apple-style-span" style="border-collapse: separate; border-spacing: 0px 0px; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; text-align: auto; -khtml-text-decorations-in-effect: none; text-indent: 0px; -apple-text-size-adjust: auto; text-transform: none; orphans: 2; white-space: normal; widows: 2; word-spacing: 0px; "><SPAN class="Apple-style-span" style="border-collapse: separate; border-spacing: 0px 0px; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; text-align: auto; -khtml-text-decorations-in-effect: none; text-indent: 0px; -apple-text-size-adjust: auto; text-transform: none; orphans: 2; white-space: normal; widows: 2; word-spacing: 0px; "><DIV>+++++++++++++++++++++++++++++++</DIV><DIV>Jianghai Zhu, Ph.D</DIV><DIV>CBR Institute for Biomedical Research</DIV><DIV>Department of Pathology</DIV><DIV>Harvard Medical School</DIV><DIV>200 Longwood Ave., Boston, MA 02115</DIV><DIV>Ph: 617-278-3211</DIV><DIV>Fx: 618-278-3232</DIV><DIV>+++++++++++++++++++++++++++++++</DIV><DIV><BR class="khtml-block-placeholder"></DIV><BR class="Apple-interchange-newline"></SPAN></SPAN></SPAN></SPAN></SPAN></SPAN></SPAN> </DIV><BR><DIV><DIV>On Mar 25, 2007, at 10:55 PM, Petrus H Zwart wrote:</DIV><BR class="Apple-interchange-newline"><BLOCKQUOTE type="cite"><P>Yes. </P><P>It is more robust and used in the so called MZ protocol. It has a large radius of convergence.</P><P>Peter</P><P><BR><BR>----- Original Message ----- <BR>From: Jianghai Zhu <<A href="mailto:jzhu@cbr.med.harvard.edu">jzhu@cbr.med.harvard.edu</A>> <BR>Date: Sunday, March 25, 2007 6:25 pm <BR>Subject: Re: [phenixbb] ls_wunit_k1 <BR>To: PHENIX user mailing list <<A href="mailto:phenixbb@phenix-online.org">phenixbb@phenix-online.org</A>> <BR><BR>> The default target for rigid body is LS from "phenix.refine --show- <BR>> <BR>> defaults=all". Is this intentional? <BR>> <BR>> Jianghai <BR>> <BR>> +++++++++++++++++++++++++++++++ <BR>> Jianghai Zhu, Ph.D <BR>> CBR Institute for Biomedical Research <BR>> Department of Pathology <BR>> Harvard Medical School <BR>> 200 Longwood Ave., Boston, MA 02115 <BR>> Ph: 617-278-3211 <BR>> Fx: 618-278-3232 <BR>> +++++++++++++++++++++++++++++++ <BR>> <BR>> <BR>> <BR>> On Mar 25, 2007, at 10:14 PM, Jianghai Zhu wrote: <BR>> <BR>> > I checked my log file and didn't find "automatic adjustment". <BR>> My <BR> > > main target is mlhl. However, the target function for rigid <BR>> body <BR>> > is ls_wunit_k1. I didn't choose that. Is LS the default for <BR>> rigid <BR>> > body? <BR>> > <BR>> > Jianghai <BR>> > <BR>> > +++++++++++++++++++++++++++++++ <BR>> > Jianghai Zhu, Ph.D <BR>> > CBR Institute for Biomedical Research <BR>> > Department of Pathology <BR>> > Harvard Medical School <BR>> > 200 Longwood Ave., Boston, MA 02115 <BR>> > Ph: 617-278-3211 <BR>> > Fx: 618-278-3232 <BR>> > +++++++++++++++++++++++++++++++ <BR>> > <BR>> > <BR>> > <BR>> > On Mar 25, 2007, at 10:00 PM, Ralf W. Grosse-Kunstleve wrote: <BR>> > <BR>> >>> You are right. Somehow, the default target function in <BR>> >>> refinement.bulk_solvent_and_scale is LS, not ML. <BR>> >> <BR> > >> The default (phenix.refine --show-defaults=all) is actually ml. <BR>> >> However, if the main target is set to ls the bulk_solvent_and_scale <BR>> >> target is automatically reset to ls, too. There should be <BR>> >> corresponding <BR>> >> messages in the log file ("automatic adjustment"). <BR>> >> Ralf <BR>> >> _______________________________________________ <BR>> >> phenixbb mailing list <BR>> >> <A href="mailto:phenixbb@phenix-online.org">phenixbb@phenix-online.org</A> <BR>> >> <A href="http://www.phenix-online.org/mailman/listinfo/phenixbb">http://www.phenix-online.org/mailman/listinfo/phenixbb</A> <BR>> > <BR>> > _______________________________________________ <BR>> > phenixbb mailing list <BR>> > <A href="mailto:phenixbb@phenix-online.org">phenixbb@phenix-online.org</A> <BR>> > <A href="http://www.phenix-online.org/mailman/listinfo/phenixbb">http://www.phenix-online.org/mailman/listinfo/phenixbb</A> <BR>> <BR>> </P><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">_______________________________________________</DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">phenixbb mailing list</DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><A href="mailto:phenixbb@phenix-online.org">phenixbb@phenix-online.org</A></DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><A href="http://www.phenix-online.org/mailman/listinfo/phenixbb">http://www.phenix-online.org/mailman/listinfo/phenixbb</A></DIV> </BLOCKQUOTE></DIV><BR></DIV></BODY></HTML>