<div>Thanks for answering.</div>
<div> </div>
<div>I must have been half asleep when I tried using & before in linux. I remember it not working but I probably misskeyed something as it was the first couple of time I ran phenix. It's working now.</div>
<div> </div>
<div>I was using a cci application from January so I'll try the newest version for the ordered solvent.</div>
<div> </div>
<div>Thanks again, </div>
<div>Mary<br><br> </div>
<div><span class="gmail_quote">On 2/21/08, <b class="gmail_sendername">Ralf W. Grosse-Kunstleve</b> <<a href="mailto:rwgk@cci.lbl.gov">rwgk@cci.lbl.gov</a>> wrote:</span>
<blockquote class="gmail_quote" style="PADDING-LEFT: 1ex; MARGIN: 0px 0px 0px 0.8ex; BORDER-LEFT: #ccc 1px solid">Hi Mary,<br><br>> First, I have a hopefully easy question. I can't seem to figure it out<br>> although feel like I should be able to. Is there a way to run a<br>
> phenix.refine job in the background? I tried using the & like I usually do<br>> and it didn't work.<br><br>In this respect, phenix.refine is like any other Unix command.<br>It will work if you direct both "stdout" and "stderr" to a file,<br>
e.g. in tcsh:<br><br>phenix.refine model.pdb data.mtz >& logfile &<br><br>I think newer bash versions also support the simple ">&" syntax.<br>It is a good habit to redirect the output of all background jobs<br>
in this way.<br>The --quiet option pointed out by others is a good idea, too. But to<br>be sure a background command doesn't hang always use the redirection<br>to a file.<br><br>> Third, is it possible to run phenix.refine in parallel at all. My structure<br>
> is annoying large and the parallelization of FFT in CNS seems to help speed<br>> things up abit.<br><br>No, sorry. We will address this at some point in the future.<br><br>Ralf<br>_______________________________________________<br>
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</blockquote></div><br>