Hi <div>I am giving new to Phenix and the Phenix GUI. For starters I am trying to run the prime and switch strategy in Phenix.</div><div><br></div><div>I know all my inputs are fine (see below) but the program aborts ( GUI turns red ) after a few seconds.</div>
<div><br></div><div>I checked the <a href="http://resolve.com">resolve.com</a> file in the directory and it has a command "unlimit" which in Leopard causes the following output to be echoed to the stdout</div><div>
"unlimit: descriptors: Can't remove limit (Invalid argument)"</div><div><br></div><div>Once I deleted the unlimit command I can run the script just fine from a shell.</div><div><br></div><div>My question is how can I tweak the Phenix GUI so that I dont have to run everything from the shell by manually editing the <a href="http://resolve.com">resolve.com</a> file.</div>
<div>The script that stops the GUI is reproduced here.<br></div><div>Thanks for your help</div><div><br></div><div>Hari Jayaram</div><div>Postdoc , Brandeis University</div><div><br></div><div><br></div><div>script:</div>
<div><br></div><div><div>#!/bin/csh </div><div>setenv SOLVEDIR /usr/local/phenix-1.3b-rc6/solve_resolve/ext_ref_files</div><div>setenv SOLVEBIN /usr/local/phenix-1.3b-rc6/build/mac-intel-osx/solve_resolve/exe</div><div><br>
</div><div>#</div><div>setenv CCP4_OPEN UNKNOWN</div><div>setenv SYMOP $SOLVEDIR/symop.lib</div><div>unlimit</div><div>#</div><div><br></div><div><br></div><div>$SOLVEBIN/resolve<<EOF</div><div>access_file mirima.dat</div>
<div>labin FP=F_s3-3 FC=FC PHIC=PHIC FOM=FOM FWT=FWT </div><div>hklin resolve_input.mtz</div><div>mask_cycles 5</div><div>minor_cycles 10</div><div>hklout testpms-resolve.mtz</div><div>no_build</div><div>prime_and_switch </div>
<div><br></div><div><br></div><div>EOF</div><div><br></div><div>unlimit returns------------></div><div><br></div><div><div>[mango:hj/s3-3/prime_switch] hari% unlimit</div><div>unlimit: descriptors: Can't remove limit (Invalid argument)</div>
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