Build tag: 2008_08_09_0053 Please enter the number of available CPUs [1]: Number of available CPUs: 1 Installing Python-2.5.2_cci from sources Configuring Python Compiling Python. This may take a while. Installing Python Done installing Python. Python 2.5.2 Precompiling all .py files. This may take a minute or two. Configuring cci_apps build directory Python: 2.5.2 "/usr/local/archive/phenix/cci_apps-1.3/cci_apps_build/base/bin/python" Compiler: default Build mode: release Warning level: 0 Static libraries: False Static exe: False Scan Boost headers: False Write full flex_fwd.h files: True Build Boost.Python extensions: True Define BOOST_PYTHON_NO_PY_SIGNATURES: False Boost threads enabled: False Enable OpenMP if possible: True command_version_suffix: None Top-down list of all modules involved: phenix /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/phenix probe /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/probe reduce /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/reduce elbow /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/elbow PyQuante /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/PyQuante Plex /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/Plex tntbx /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/tntbx mmtbx /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/mmtbx iotbx /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/iotbx PyCifRW /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/PyCifRW ccp4io+adaptbx /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/ccp4io /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/ccp4io_adaptbx cctbx /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/cctbx scitbx /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/scitbx omptbx /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/omptbx boost+adaptbx /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost_adaptbx chiltbx /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/chiltbx libtbx /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/libtbx Processing: "/usr/local/archive/phenix/cci_apps-1.3/cci_apps_build/dispatcher_include_cci_apps.sh" Creating files in build directory: "/usr/local/archive/phenix/cci_apps-1.3/cci_apps_build" dispatcher_include_template.sh dispatcher_head.sh setpaths.sh setpaths.csh setpaths_all.sh setpaths_all.csh setpaths_debug.sh unsetpaths.sh setpaths_debug.csh unsetpaths.csh SConstruct run_tests.csh Processing: "/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/libtbx/libtbx/command_line" Processing: "/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost_adaptbx/boost/command_line" Processing: "/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/scitbx/scitbx/command_line" Processing: "/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/cctbx/cctbx/command_line" Processing: "/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/PyCifRW/command_line" Processing: "/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/iotbx/iotbx/command_line" Processing: "/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/mmtbx/mmtbx/command_line" Processing: "/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/elbow/elbow/command_line" Processing: "/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/phenix/phenix/command_line" Processing: "/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/libtbx/libtbx_refresh.py" Processing: "/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/scitbx/libtbx_refresh.py" Generating C++ header files in: "/usr/local/archive/phenix/cci_apps-1.3/cci_apps_build/include/scitbx/array_family" Generating C++ files in: "/usr/local/archive/phenix/cci_apps-1.3/cci_apps_build/include/scitbx/array_family/boost_python" Processing: "/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/cctbx/libtbx_refresh.py" Generating C++ files in: "/usr/local/archive/phenix/cci_apps-1.3/cci_apps_build/cctbx/eltbx" Generating C++ files in: "/usr/local/archive/phenix/cci_apps-1.3/cci_apps_build/include/cctbx/boost_python" Processing: "/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/reduce/libtbx_refresh.py" Processing: "/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/probe/libtbx_refresh.py" Installing cci_apps modules. This may take a while. scons: Reading SConscript files ... libtbx.scons: OpenMP is not supported. libtbx.scons: implicit dependency scan disabled for directory /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost scons: done reading SConscript files. scons: Building targets ... cc -o PyQuante/Src/chgp.o -c -DNDEBUG -O2 -OPT:Olimit=0 -DPYQUANTE_FULLY_QUALIFIED_MODULE_NAME -Ibase/include/python2.5 -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/base/include/python2.5 /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/PyQuante/Src/chgp.c cc -o PyQuante/Src/cints.o -c -DNDEBUG -O2 -OPT:Olimit=0 -DPYQUANTE_FULLY_QUALIFIED_MODULE_NAME -Ibase/include/python2.5 -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/base/include/python2.5 /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/PyQuante/Src/cints.c cc -o PyQuante/Src/crys.o -c -DNDEBUG -O2 -OPT:Olimit=0 -DPYQUANTE_FULLY_QUALIFIED_MODULE_NAME -Ibase/include/python2.5 -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/base/include/python2.5 /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/PyQuante/Src/crys.c CC -n32 -mips4 -LANG:std -LANG:pch=OFF -no_prelink -ptused -o boost/libs/python/src/converter/arg_to_python_base.o -c -woff 1001,1174,1183,1188,1234,1311,1682,1685,3321,3439,3506,3896,3968,3970 -DBOOST_DISABLE_THREADS -DNDEBUG -O2 -OPT:Olimit=0 -DBOOST_ALL_NO_LIB -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost -Ibase/include/python2.5 -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/base/include/python2.5 /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/libs/python/src/converter/arg_to_python_base.cpp CC -n32 -mips4 -LANG:std -LANG:pch=OFF -no_prelink -ptused -o boost/libs/python/src/converter/from_python.o -c -woff 1001,1174,1183,1188,1234,1311,1682,1685,3321,3439,3506,3896,3968,3970 -DBOOST_DISABLE_THREADS -DNDEBUG -O2 -OPT:Olimit=0 -DBOOST_ALL_NO_LIB -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost -Ibase/include/python2.5 -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/base/include/python2.5 /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/libs/python/src/converter/from_python.cpp CC -n32 -mips4 -LANG:std -LANG:pch=OFF -no_prelink -ptused -o boost/libs/python/src/converter/registry.o -c -woff 1001,1174,1183,1188,1234,1311,1682,1685,3321,3439,3506,3896,3968,3970 -DBOOST_DISABLE_THREADS -DNDEBUG -O2 -OPT:Olimit=0 -DBOOST_ALL_NO_LIB -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost -Ibase/include/python2.5 -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/base/include/python2.5 /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/libs/python/src/converter/registry.cpp CC -n32 -mips4 -LANG:std -LANG:pch=OFF -no_prelink -ptused -o boost/libs/python/src/converter/type_id.o -c -woff 1001,1174,1183,1188,1234,1311,1682,1685,3321,3439,3506,3896,3968,3970 -DBOOST_DISABLE_THREADS -DNDEBUG -O2 -OPT:Olimit=0 -DBOOST_ALL_NO_LIB -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost -Ibase/include/python2.5 -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/base/include/python2.5 /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/libs/python/src/converter/type_id.cpp CC -n32 -mips4 -LANG:std -LANG:pch=OFF -no_prelink -ptused -o boost/libs/python/src/dict.o -c -woff 1001,1174,1183,1188,1234,1311,1682,1685,3321,3439,3506,3896,3968,3970 -DBOOST_DISABLE_THREADS -DNDEBUG -O2 -OPT:Olimit=0 -DBOOST_ALL_NO_LIB -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost -Ibase/include/python2.5 -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/base/include/python2.5 /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/libs/python/src/dict.cpp cc-1460 CC: WARNING File = /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/boost/python/object_core.hpp, Line = 507 Function function "boost::python::api::object_base::~object_base" is redeclared "inline" after being called. inline api::object_base::~object_base() ^ CC -n32 -mips4 -LANG:std -LANG:pch=OFF -no_prelink -ptused -o boost/libs/python/src/errors.o -c -woff 1001,1174,1183,1188,1234,1311,1682,1685,3321,3439,3506,3896,3968,3970 -DBOOST_DISABLE_THREADS -DNDEBUG -O2 -OPT:Olimit=0 -DBOOST_ALL_NO_LIB -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost -Ibase/include/python2.5 -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/base/include/python2.5 /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/libs/python/src/errors.cpp CC -n32 -mips4 -LANG:std -LANG:pch=OFF -no_prelink -ptused -o boost/libs/python/src/exec.o -c -woff 1001,1174,1183,1188,1234,1311,1682,1685,3321,3439,3506,3896,3968,3970 -DBOOST_DISABLE_THREADS -DNDEBUG -O2 -OPT:Olimit=0 -DBOOST_ALL_NO_LIB -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost -Ibase/include/python2.5 -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/base/include/python2.5 /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/libs/python/src/exec.cpp cc-1460 CC: WARNING File = /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/boost/python/object_core.hpp, Line = 507 Function function "boost::python::api::object_base::~object_base" is redeclared "inline" after being called. inline api::object_base::~object_base() ^ CC -n32 -mips4 -LANG:std -LANG:pch=OFF -no_prelink -ptused -o boost/libs/python/src/import.o -c -woff 1001,1174,1183,1188,1234,1311,1682,1685,3321,3439,3506,3896,3968,3970 -DBOOST_DISABLE_THREADS -DNDEBUG -O2 -OPT:Olimit=0 -DBOOST_ALL_NO_LIB -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost -Ibase/include/python2.5 -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/base/include/python2.5 /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/libs/python/src/import.cpp cc-1460 CC: WARNING File = /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/boost/python/object_core.hpp, Line = 507 Function function "boost::python::api::object_base::~object_base" is redeclared "inline" after being called. inline api::object_base::~object_base() ^ CC -n32 -mips4 -LANG:std -LANG:pch=OFF -no_prelink -ptused -o boost/libs/python/src/list.o -c -woff 1001,1174,1183,1188,1234,1311,1682,1685,3321,3439,3506,3896,3968,3970 -DBOOST_DISABLE_THREADS -DNDEBUG -O2 -OPT:Olimit=0 -DBOOST_ALL_NO_LIB -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost -Ibase/include/python2.5 -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/base/include/python2.5 /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/libs/python/src/list.cpp cc-1460 CC: WARNING File = /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/boost/python/object_core.hpp, Line = 507 Function function "boost::python::api::object_base::~object_base" is redeclared "inline" after being called. inline api::object_base::~object_base() ^ CC -n32 -mips4 -LANG:std -LANG:pch=OFF -no_prelink -ptused -o boost/libs/python/src/long.o -c -woff 1001,1174,1183,1188,1234,1311,1682,1685,3321,3439,3506,3896,3968,3970 -DBOOST_DISABLE_THREADS -DNDEBUG -O2 -OPT:Olimit=0 -DBOOST_ALL_NO_LIB -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost -Ibase/include/python2.5 -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/base/include/python2.5 /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/libs/python/src/long.cpp cc-1460 CC: WARNING File = /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/boost/python/object_core.hpp, Line = 507 Function function "boost::python::api::object_base::~object_base" is redeclared "inline" after being called. inline api::object_base::~object_base() ^ CC -n32 -mips4 -LANG:std -LANG:pch=OFF -no_prelink -ptused -o boost/libs/python/src/module.o -c -woff 1001,1174,1183,1188,1234,1311,1682,1685,3321,3439,3506,3896,3968,3970 -DBOOST_DISABLE_THREADS -DNDEBUG -O2 -OPT:Olimit=0 -DBOOST_ALL_NO_LIB -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost -Ibase/include/python2.5 -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/base/include/python2.5 /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/libs/python/src/module.cpp cc-1460 CC: WARNING File = /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/boost/python/object_core.hpp, Line = 507 Function function "boost::python::api::object_base::~object_base" is redeclared "inline" after being called. inline api::object_base::~object_base() ^ CC -n32 -mips4 -LANG:std -LANG:pch=OFF -no_prelink -ptused -o boost/libs/python/src/numeric.o -c -woff 1001,1174,1183,1188,1234,1311,1682,1685,3321,3439,3506,3896,3968,3970 -DBOOST_DISABLE_THREADS -DNDEBUG -O2 -OPT:Olimit=0 -DBOOST_ALL_NO_LIB -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost -Ibase/include/python2.5 -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/base/include/python2.5 /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/libs/python/src/numeric.cpp cc-1460 CC: WARNING File = /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/boost/python/object_core.hpp, Line = 507 Function function "boost::python::api::object_base::~object_base" is redeclared "inline" after being called. inline api::object_base::~object_base() ^ CC -n32 -mips4 -LANG:std -LANG:pch=OFF -no_prelink -ptused -o boost/libs/python/src/object/class.o -c -woff 1001,1174,1183,1188,1234,1311,1682,1685,3321,3439,3506,3896,3968,3970 -DBOOST_DISABLE_THREADS -DNDEBUG -O2 -OPT:Olimit=0 -DBOOST_ALL_NO_LIB -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost -Ibase/include/python2.5 -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/base/include/python2.5 /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/libs/python/src/object/class.cpp cc-1460 CC: WARNING File = /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/boost/python/object_core.hpp, Line = 507 Function function "boost::python::api::object_base::~object_base" is redeclared "inline" after being called. inline api::object_base::~object_base() ^ CC -n32 -mips4 -LANG:std -LANG:pch=OFF -no_prelink -ptused -o boost/libs/python/src/object/enum.o -c -woff 1001,1174,1183,1188,1234,1311,1682,1685,3321,3439,3506,3896,3968,3970 -DBOOST_DISABLE_THREADS -DNDEBUG -O2 -OPT:Olimit=0 -DBOOST_ALL_NO_LIB -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost -Ibase/include/python2.5 -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/base/include/python2.5 /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/libs/python/src/object/enum.cpp cc-1460 CC: WARNING File = /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/boost/python/object_core.hpp, Line = 507 Function function "boost::python::api::object_base::~object_base" is redeclared "inline" after being called. inline api::object_base::~object_base() ^ CC -n32 -mips4 -LANG:std -LANG:pch=OFF -no_prelink -ptused -o boost/libs/python/src/object/function.o -c -woff 1001,1174,1183,1188,1234,1311,1682,1685,3321,3439,3506,3896,3968,3970 -DBOOST_DISABLE_THREADS -DNDEBUG -O2 -OPT:Olimit=0 -DBOOST_ALL_NO_LIB -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost -Ibase/include/python2.5 -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/base/include/python2.5 /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/libs/python/src/object/function.cpp cc-1460 CC: WARNING File = /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/boost/python/object_core.hpp, Line = 507 Function function "boost::python::api::object_base::~object_base" is redeclared "inline" after being called. inline api::object_base::~object_base() ^ CC -n32 -mips4 -LANG:std -LANG:pch=OFF -no_prelink -ptused -o boost/libs/python/src/object/function_doc_signature.o -c -woff 1001,1174,1183,1188,1234,1311,1682,1685,3321,3439,3506,3896,3968,3970 -DBOOST_DISABLE_THREADS -DNDEBUG -O2 -OPT:Olimit=0 -DBOOST_ALL_NO_LIB -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost -Ibase/include/python2.5 -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/base/include/python2.5 /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/libs/python/src/object/function_doc_signature.cpp cc-1460 CC: WARNING File = /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/boost/python/object_core.hpp, Line = 507 Function function "boost::python::api::object_base::~object_base" is redeclared "inline" after being called. inline api::object_base::~object_base() ^ CC -n32 -mips4 -LANG:std -LANG:pch=OFF -no_prelink -ptused -o boost/libs/python/src/object/inheritance.o -c -woff 1001,1174,1183,1188,1234,1311,1682,1685,3321,3439,3506,3896,3968,3970 -DBOOST_DISABLE_THREADS -DNDEBUG -O2 -OPT:Olimit=0 -DBOOST_ALL_NO_LIB -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost -Ibase/include/python2.5 -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/base/include/python2.5 /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/libs/python/src/object/inheritance.cpp CC -n32 -mips4 -LANG:std -LANG:pch=OFF -no_prelink -ptused -o boost/libs/python/src/object/iterator.o -c -woff 1001,1174,1183,1188,1234,1311,1682,1685,3321,3439,3506,3896,3968,3970 -DBOOST_DISABLE_THREADS -DNDEBUG -O2 -OPT:Olimit=0 -DBOOST_ALL_NO_LIB -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost -Ibase/include/python2.5 -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/base/include/python2.5 /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/libs/python/src/object/iterator.cpp cc-1460 CC: WARNING File = /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/boost/python/object_core.hpp, Line = 507 Function function "boost::python::api::object_base::~object_base" is redeclared "inline" after being called. inline api::object_base::~object_base() ^ CC -n32 -mips4 -LANG:std -LANG:pch=OFF -no_prelink -ptused -o boost/libs/python/src/object/life_support.o -c -woff 1001,1174,1183,1188,1234,1311,1682,1685,3321,3439,3506,3896,3968,3970 -DBOOST_DISABLE_THREADS -DNDEBUG -O2 -OPT:Olimit=0 -DBOOST_ALL_NO_LIB -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost -Ibase/include/python2.5 -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/base/include/python2.5 /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/libs/python/src/object/life_support.cpp CC -n32 -mips4 -LANG:std -LANG:pch=OFF -no_prelink -ptused -o boost/libs/python/src/object/pickle_support.o -c -woff 1001,1174,1183,1188,1234,1311,1682,1685,3321,3439,3506,3896,3968,3970 -DBOOST_DISABLE_THREADS -DNDEBUG -O2 -OPT:Olimit=0 -DBOOST_ALL_NO_LIB -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost -Ibase/include/python2.5 -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/base/include/python2.5 /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/libs/python/src/object/pickle_support.cpp cc-1460 CC: WARNING File = /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/boost/python/object_core.hpp, Line = 507 Function function "boost::python::api::object_base::~object_base" is redeclared "inline" after being called. inline api::object_base::~object_base() ^ CC -n32 -mips4 -LANG:std -LANG:pch=OFF -no_prelink -ptused -o boost/libs/python/src/object/stl_iterator.o -c -woff 1001,1174,1183,1188,1234,1311,1682,1685,3321,3439,3506,3896,3968,3970 -DBOOST_DISABLE_THREADS -DNDEBUG -O2 -OPT:Olimit=0 -DBOOST_ALL_NO_LIB -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost -Ibase/include/python2.5 -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/base/include/python2.5 /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/libs/python/src/object/stl_iterator.cpp cc-1460 CC: WARNING File = /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/boost/python/object_core.hpp, Line = 507 Function function "boost::python::api::object_base::~object_base" is redeclared "inline" after being called. inline api::object_base::~object_base() ^ CC -n32 -mips4 -LANG:std -LANG:pch=OFF -no_prelink -ptused -o boost/libs/python/src/object_operators.o -c -woff 1001,1174,1183,1188,1234,1311,1682,1685,3321,3439,3506,3896,3968,3970 -DBOOST_DISABLE_THREADS -DNDEBUG -O2 -OPT:Olimit=0 -DBOOST_ALL_NO_LIB -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost -Ibase/include/python2.5 -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/base/include/python2.5 /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/libs/python/src/object_operators.cpp cc-1460 CC: WARNING File = /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/boost/python/object_core.hpp, Line = 507 Function function "boost::python::api::object_base::~object_base" is redeclared "inline" after being called. inline api::object_base::~object_base() ^ CC -n32 -mips4 -LANG:std -LANG:pch=OFF -no_prelink -ptused -o boost/libs/python/src/object_protocol.o -c -woff 1001,1174,1183,1188,1234,1311,1682,1685,3321,3439,3506,3896,3968,3970 -DBOOST_DISABLE_THREADS -DNDEBUG -O2 -OPT:Olimit=0 -DBOOST_ALL_NO_LIB -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost -Ibase/include/python2.5 -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/base/include/python2.5 /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/libs/python/src/object_protocol.cpp cc-1460 CC: WARNING File = /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/boost/python/object_core.hpp, Line = 507 Function function "boost::python::api::object_base::~object_base" is redeclared "inline" after being called. inline api::object_base::~object_base() ^ CC -n32 -mips4 -LANG:std -LANG:pch=OFF -no_prelink -ptused -o boost/libs/python/src/slice.o -c -woff 1001,1174,1183,1188,1234,1311,1682,1685,3321,3439,3506,3896,3968,3970 -DBOOST_DISABLE_THREADS -DNDEBUG -O2 -OPT:Olimit=0 -DBOOST_ALL_NO_LIB -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost -Ibase/include/python2.5 -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/base/include/python2.5 /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/libs/python/src/slice.cpp cc-1460 CC: WARNING File = /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/boost/python/object_core.hpp, Line = 507 Function function "boost::python::api::object_base::~object_base" is redeclared "inline" after being called. inline api::object_base::~object_base() ^ CC -n32 -mips4 -LANG:std -LANG:pch=OFF -no_prelink -ptused -o boost/libs/python/src/str.o -c -woff 1001,1174,1183,1188,1234,1311,1682,1685,3321,3439,3506,3896,3968,3970 -DBOOST_DISABLE_THREADS -DNDEBUG -O2 -OPT:Olimit=0 -DBOOST_ALL_NO_LIB -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost -Ibase/include/python2.5 -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/base/include/python2.5 /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/libs/python/src/str.cpp cc-1460 CC: WARNING File = /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/boost/python/object_core.hpp, Line = 507 Function function "boost::python::api::object_base::~object_base" is redeclared "inline" after being called. inline api::object_base::~object_base() ^ CC -n32 -mips4 -LANG:std -LANG:pch=OFF -no_prelink -ptused -o boost/libs/python/src/tuple.o -c -woff 1001,1174,1183,1188,1234,1311,1682,1685,3321,3439,3506,3896,3968,3970 -DBOOST_DISABLE_THREADS -DNDEBUG -O2 -OPT:Olimit=0 -DBOOST_ALL_NO_LIB -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost -Ibase/include/python2.5 -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/base/include/python2.5 /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/libs/python/src/tuple.cpp cc-1460 CC: WARNING File = /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/boost/python/object_core.hpp, Line = 507 Function function "boost::python::api::object_base::~object_base" is redeclared "inline" after being called. inline api::object_base::~object_base() ^ CC -n32 -mips4 -LANG:std -LANG:pch=OFF -no_prelink -ptused -o boost/libs/python/src/wrapper.o -c -woff 1001,1174,1183,1188,1234,1311,1682,1685,3321,3439,3506,3896,3968,3970 -DBOOST_DISABLE_THREADS -DNDEBUG -O2 -OPT:Olimit=0 -DBOOST_ALL_NO_LIB -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost -Ibase/include/python2.5 -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/base/include/python2.5 /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/libs/python/src/wrapper.cpp cc-1460 CC: WARNING File = /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/boost/python/object_core.hpp, Line = 507 Function function "boost::python::api::object_base::~object_base" is redeclared "inline" after being called. inline api::object_base::~object_base() ^ CC -n32 -mips4 -LANG:std -LANG:pch=OFF -no_prelink -ptused -o boost_adaptbx/builtin_converters.o -c -woff 1001,1174,1183,1188,1234,1311,1682,1685,3321,3439,3506,3896,3968,3970 -DBOOST_DISABLE_THREADS -DNDEBUG -O2 -OPT:Olimit=0 -DBOOST_ALL_NO_LIB -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost -Ibase/include/python2.5 -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/base/include/python2.5 boost_adaptbx/builtin_converters.cpp CC -n32 -mips4 -LANG:std -LANG:pch=OFF -no_prelink -ptused -o boost_adaptbx/hybrid_times_ext.o -c -woff 1001,1174,1183,1188,1234,1311,1682,1685,3321,3439,3506,3896,3968,3970 -DBOOST_DISABLE_THREADS -DNDEBUG -O2 -OPT:Olimit=0 -DBOOST_ALL_NO_LIB -DBOOST_PYTHON_MAX_BASES=2 -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost -DNDEBUG -O2 -OPT:Olimit=0 -Ibase/include/python2.5 -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/base/include/python2.5 /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost_adaptbx/hybrid_times_ext.cpp cc-1460 CC: WARNING File = /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/boost/python/object_core.hpp, Line = 507 Function function "boost::python::api::object_base::~object_base" is redeclared "inline" after being called. inline api::object_base::~object_base() ^ CC -n32 -mips4 -LANG:std -LANG:pch=OFF -no_prelink -ptused -o boost_adaptbx/meta_ext.o -c -woff 1001,1174,1183,1188,1234,1311,1682,1685,3321,3439,3506,3896,3968,3970 -DBOOST_DISABLE_THREADS -DNDEBUG -O2 -OPT:Olimit=0 -DBOOST_ALL_NO_LIB -DBOOST_PYTHON_MAX_BASES=2 -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost -DNDEBUG -O2 -OPT:Olimit=0 -Ibase/include/python2.5 -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/base/include/python2.5 /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost_adaptbx/meta_ext.cpp cc-1460 CC: WARNING File = /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/boost/python/object_core.hpp, Line = 507 Function function "boost::python::api::object_base::~object_base" is redeclared "inline" after being called. inline api::object_base::~object_base() ^ CC -n32 -mips4 -LANG:std -LANG:pch=OFF -no_prelink -ptused -o boost_adaptbx/optional_ext.o -c -woff 1001,1174,1183,1188,1234,1311,1682,1685,3321,3439,3506,3896,3968,3970 -DBOOST_DISABLE_THREADS -DNDEBUG -O2 -OPT:Olimit=0 -DBOOST_ALL_NO_LIB -DBOOST_PYTHON_MAX_BASES=2 -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost -DNDEBUG -O2 -OPT:Olimit=0 -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources -Ibase/include/python2.5 -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/base/include/python2.5 /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost_adaptbx/optional_ext.cpp cc-1460 CC: WARNING File = /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/boost/python/object_core.hpp, Line = 507 Function function "boost::python::api::object_base::~object_base" is redeclared "inline" after being called. inline api::object_base::~object_base() ^ CC -n32 -mips4 -LANG:std -LANG:pch=OFF -no_prelink -ptused -o boost_adaptbx/rational_ext.o -c -woff 1001,1174,1183,1188,1234,1311,1682,1685,3321,3439,3506,3896,3968,3970 -DBOOST_DISABLE_THREADS -DNDEBUG -O2 -OPT:Olimit=0 -DBOOST_ALL_NO_LIB -DBOOST_PYTHON_MAX_BASES=2 -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost -DNDEBUG -O2 -OPT:Olimit=0 -Ibase/include/python2.5 -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/base/include/python2.5 /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost_adaptbx/rational_ext.cpp cc-1460 CC: WARNING File = /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/boost/python/object_core.hpp, Line = 507 Function function "boost::python::api::object_base::~object_base" is redeclared "inline" after being called. inline api::object_base::~object_base() ^ CC -n32 -mips4 -LANG:std -LANG:pch=OFF -no_prelink -ptused -o boost_adaptbx/std_pair_ext.o -c -woff 1001,1174,1183,1188,1234,1311,1682,1685,3321,3439,3506,3896,3968,3970 -DBOOST_DISABLE_THREADS -DNDEBUG -O2 -OPT:Olimit=0 -DBOOST_ALL_NO_LIB -DBOOST_PYTHON_MAX_BASES=2 -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost -DNDEBUG -O2 -OPT:Olimit=0 -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources -Ibase/include/python2.5 -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/base/include/python2.5 /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost_adaptbx/std_pair_ext.cpp cc-1460 CC: WARNING File = /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/boost/python/object_core.hpp, Line = 507 Function function "boost::python::api::object_base::~object_base" is redeclared "inline" after being called. inline api::object_base::~object_base() ^ CC -n32 -mips4 -LANG:std -LANG:pch=OFF -no_prelink -ptused -o boost_adaptbx/tuple_ext.o -c -woff 1001,1174,1183,1188,1234,1311,1682,1685,3321,3439,3506,3896,3968,3970 -DBOOST_DISABLE_THREADS -DNDEBUG -O2 -OPT:Olimit=0 -DBOOST_ALL_NO_LIB -DBOOST_PYTHON_MAX_BASES=2 -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost -DNDEBUG -O2 -OPT:Olimit=0 -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources -Ibase/include/python2.5 -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/base/include/python2.5 /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost_adaptbx/tuple_ext.cpp cc-1460 CC: WARNING File = /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/boost/python/object_core.hpp, Line = 507 Function function "boost::python::api::object_base::~object_base" is redeclared "inline" after being called. inline api::object_base::~object_base() ^ cc -o ccp4io/lib/src/ccp4_array.o -c -DNDEBUG -O2 -OPT:Olimit=0 /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/ccp4io/lib/src/ccp4_array.c cc -o ccp4io/lib/src/ccp4_parser.o -c -DNDEBUG -O2 -OPT:Olimit=0 /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/ccp4io/lib/src/ccp4_parser.c cc -o ccp4io/lib/src/ccp4_unitcell.o -c -DNDEBUG -O2 -OPT:Olimit=0 /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/ccp4io/lib/src/ccp4_unitcell.c cc -o ccp4io/lib/src/cmtzlib.o -c -DNDEBUG -O2 -OPT:Olimit=0 /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/ccp4io/lib/src/cmtzlib.c cc -o ccp4io/lib/src/csymlib.o -c -DNDEBUG -O2 -OPT:Olimit=0 /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/ccp4io/lib/src/csymlib.c cc -o ccp4io/lib/src/cvecmat.o -c -DNDEBUG -O2 -OPT:Olimit=0 /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/ccp4io/lib/src/cvecmat.c cc -o ccp4io/lib/src/library_err.o -c -DNDEBUG -O2 -OPT:Olimit=0 /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/ccp4io/lib/src/library_err.c cc -o ccp4io/lib/src/library_file.o -c -DNDEBUG -O2 -OPT:Olimit=0 /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/ccp4io/lib/src/library_file.c cc -o ccp4io/lib/src/library_utils.o -c -DNDEBUG -O2 -OPT:Olimit=0 /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/ccp4io/lib/src/library_utils.c CC -n32 -mips4 -LANG:std -LANG:pch=OFF -no_prelink -ptused -o cctbx/adptbx/boost_python/adptbx_ext.o -c -woff 1001,1174,1183,1188,1234,1311,1682,1685,3321,3439,3506,3896,3968,3970 -DBOOST_DISABLE_THREADS -DNDEBUG -O2 -OPT:Olimit=0 -DBOOST_ALL_NO_LIB -DBOOST_PYTHON_MAX_BASES=2 -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost -DNDEBUG -O2 -OPT:Olimit=0 -Iinclude -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/include -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/cctbx/include -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/scitbx/include -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources -Ibase/include/python2.5 -I/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/base/include/python2.5 /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/cctbx/adptbx/boost_python/adptbx_ext.cpp cc-1143 CC: ERROR File = /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/boost/format/format_class.hpp, Line = 104 Declaration is incompatible with function template "boost::basic_format &boost::io::detail::feed(boost::basic_format &, T)" (declared at line 52 of "/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/boost/ format/internals_fwd.hpp"). io::detail::feed (basic_format&, T); ^ cc-1143 CC: ERROR File = /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/boost/format/format_class.hpp, Line = 107 Declaration is incompatible with function template "void boost::io::detail::distribute(boost::basic_format &, T)" (declared at line 48 of "/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/boost/ format/internals_fwd.hpp"). void io::detail::distribute (basic_format&, T); ^ cc-1143 CC: ERROR File = /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/boost/format/format_class.hpp, Line = 111 Declaration is incompatible with function template "boost::basic_format &boost::io::detail::modify_item_body(boost::basic_format &, int, T)" (declared at line 33 of "/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/boost/ format/internals_fwd.hpp"). io::detail::modify_item_body (basic_format&, int, T); ^ cc-1143 CC: ERROR File = /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/boost/format/format_class.hpp, Line = 115 Declaration is incompatible with function template "boost::basic_format &boost::io::detail::bind_arg_body(boost::basic_format &, int, const T &)" (declared at line 38 of "/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost/boost/ format/internals_fwd.hpp"). io::detail::bind_arg_body (basic_format&, int, const T&); ^ 4 errors detected in the compilation of "/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/cctbx/adptbx/boost_python/adptbx_ext.cpp". scons: *** [cctbx/adptbx/boost_python/adptbx_ext.o] Error 2 scons: building terminated because of errors. usr+sys time: 9.58 seconds, ticks: 3906980, micro-seconds/tick: 2.452 wall clock time: 10 minutes 37.89 seconds (637.89 seconds total) Running a selected test libtbx.python "/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost_adaptbx/tst_rational.py" Traceback (most recent call last): File "/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost_adaptbx/tst_rational.py", line 1, in from boost import rational File "/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost_adaptbx/boost/rational.py", line 1, in import boost.python File "/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost_adaptbx/boost/python.py", line 45, in ext = import_ext("boost_python_meta_ext") File "/usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost_adaptbx/boost/python.py", line 24, in import_ext + [" "+p for p in sys.path])) ImportError: __import__("boost_python_meta_ext"): No module named boost_python_meta_ext sys.path: /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost_adaptbx /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/phenix /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/elbow /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/PyQuante /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/tntbx /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/mmtbx /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/iotbx /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/PyCifRW /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/cctbx /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/scitbx /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/boost_adaptbx /usr/local/archive/phenix/cci_apps-1.3/cci_apps_sources/libtbx /usr/local/archive/phenix/cci_apps-1.3/cci_apps_build/lib /usr/local/archive/phenix/cci_apps-1.3/cci_apps_build/base/lib/python25.zip /usr/local/archive/phenix/cci_apps-1.3/cci_apps_build/base/lib/python2.5 /usr/local/archive/phenix/cci_apps-1.3/cci_apps_build/base/lib/python2.5/plat-irix6 /usr/local/archive/phenix/cci_apps-1.3/cci_apps_build/base/lib/python2.5/lib-tk /usr/local/archive/phenix/cci_apps-1.3/cci_apps_build/base/lib/python2.5/lib-dynload /usr/local/archive/phenix/cci_apps-1.3/cci_apps_build/base/lib/python2.5/site-packages *** *** csh and tcsh users: *** To use this installation in a new shell or process run the command: *** *** source "/usr/local/archive/phenix/cci_apps-1.3/cci_apps_build/setpaths.csh" *** *** You may want to add this line to your .cshrc file. *** *** sh and bash users: *** To use this installation in a new shell or process run the command: *** *** . "/usr/local/archive/phenix/cci_apps-1.3/cci_apps_build/setpaths.sh" *** *** You may want to add this line to your .profile or .bashrc file. ***