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Hi Jason,<br>
<br>
- run your model through TLSMD server to identify TLS domains (it will
produce PHENIX friendly TLS groups selections);<br>
<a class="moz-txt-link-freetext" href="http://skuld.bmsc.washington.edu/~tlsmd/">http://skuld.bmsc.washington.edu/~tlsmd/</a><br>
<br>
- use these selections for TLS refinement in PHENIX:<br>
<a class="moz-txt-link-freetext" href="http://www.phenix-online.org/documentation/refinement.htm">http://www.phenix-online.org/documentation/refinement.htm</a><br>
for example, the command is:<br>
<br>
phenix.refine model.pdb data.hkl
strategy=individual_sites+individual_adp+tls tls_selections.txt<br>
<br>
Pavel.<br>
<br>
<br>
On 10/17/2008 3:10 AM, <a class="moz-txt-link-abbreviated" href="mailto:allbette@gmail.com">allbette@gmail.com</a> wrote:
<blockquote
cite="mid:36483e720810170310k201ad94aq9b1e08619a63ecd7@mail.gmail.com"
type="cite">
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<div>Hi All,</div>
<div> </div>
<div>I just refined a structure at 2.95A and getting a good R-work
and R-free(0.236 and 0.274). When I checked the PDB, I found many
residues have high temperature factor over 100. How can I use Phenix or
CNS fix those high temperature factor for further refinment?</div>
<div> </div>
<div>Thank you</div>
<div>Jason</div>
<div> </div>
</div>
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