<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
<html>
<head>
<meta content="text/html;charset=ISO-8859-1" http-equiv="Content-Type">
</head>
<body bgcolor="#ffffff" text="#000000">
Tiancen<br>
<br>
This is avery difficult bug to reproduce and therefore resolve. There
is a new GUI in the works right now. I will attempt to solve this
problem but you have options. You can re-run the GUI and see if it
avoids the problem area. You can re-run the wizard using the command
line options which does the same job but avoids the GUI completely.<br>
<br>
Use phenix.doc to read about the AutoSol wizard command line options.<br>
<br>
Nigel<br>
<br>
On 2/11/09 9:24 AM, TC Hu wrote:
<blockquote
cite="mid:b3e62d0c0902110924j70d9107fhdf1eb3faf801c008@mail.gmail.com"
type="cite">Dear all,
<div><br>
</div>
<div>I got the "wx._core.PyDeadObjectError" when using Phenix 1.4-3
GUI under OS X 10.5.6 for a SAD run. The program stuck at the blue
window after the first step of AutoSol. Attached is the log file. Could
anyone help me find out what is wrong? Thanks very much in advance!</div>
<div>Cheers,</div>
<div><br>
</div>
<div>Tiancen Hu</div>
<div>Shanghai Institute of Materia Medica</div>
<div>Chinese Academy of Sciences</div>
<div>
<div><br>
</div>
<div>"</div>
<div>PHENIX distribution located in /usr/local/phenix-1.4-3/phenix</div>
<div><br>
</div>
<div><br>
</div>
<div><span class="Apple-tab-span" style="white-space: pre;"> </span>Project
Details</div>
<div><span class="Apple-tab-span" style="white-space: pre;"> </span>Project
Name: phenix2</div>
<div><span class="Apple-tab-span" style="white-space: pre;"> </span>Date
Stamp : Thu Feb 12 01:08:25 2009</div>
<div><span class="Apple-tab-span" style="white-space: pre;"> </span>Machine
: htcdemacbook-pro.local</div>
<div><span class="Apple-tab-span" style="white-space: pre;"> </span>Directory
: /Users/htc/xtal/subjects/cd147se/phenix2</div>
<div><br>
</div>
<div><span class="Apple-tab-span" style="white-space: pre;"> </span>PDS
Server Details</div>
<div><span class="Apple-tab-span" style="white-space: pre;"> </span>User
: htc</div>
<div><span class="Apple-tab-span" style="white-space: pre;"> </span>Machine
: 192.168.1.3</div>
<div><span class="Apple-tab-span" style="white-space: pre;"> </span>Directory
: /Users/htc/xtal/subjects/cd147se/phenix2</div>
<div><span class="Apple-tab-span" style="white-space: pre;"> </span>Port
: 47702</div>
<div><span class="Apple-tab-span" style="white-space: pre;"> </span>PID
: 4863</div>
<div><br>
</div>
<div><br>
</div>
<div>WIZARD: AutoSol</div>
<div><br>
</div>
<div>************************************************************</div>
<div> PHENIX AutoSol Thu Feb 12 01:19:23 2009</div>
<div>************************************************************</div>
<div><br>
</div>
<div>PHENIX VERSION: 1.4 of 08-12-2008</div>
<div>PHENIX RELEASE_TAG : 3</div>
<div>PHENIX MTYPE : mac-intel-osx</div>
<div>PHENIX MVERSION : osx-10.5.6</div>
<div><br>
</div>
<div>LOCAL INIT: Readdatabase: True SetUpInputs: True</div>
<div>AutoSol </div>
<div> Thu Feb 12 01:19:23 2009</div>
<div><br>
</div>
<div>Gathering defaults from ['AutoBuild', 'ImportRawData',
'LigandFit', 'AutoMR']</div>
<div>WORKDIR: /Users/htc/xtal/subjects/cd147se/phenix2</div>
<div>Checking for KnownWizards: ['AutoSol', 'AutoBuild',
'ImportRawData']</div>
<div>Running start first time through</div>
<div>Setting default value of 2.5 for resolution</div>
<div>Setting default value of 0.5 for solvent_fraction</div>
<div>Setting default value of 200 for residues</div>
<div>Guessing sequence file is cd147_21a.seq</div>
<div>application method: AutoSol_start</div>
<div>Getting inputs on first pass...</div>
<div>SUMMARY Input files dataset #1</div>
<div>amom360_p41212_31A.sca</div>
<div>Traceback (most recent call last):</div>
<div> File "/usr/local/phenix-1.4-3/phenix/wxGUI/wxtask.py", line
522, in OnGoButton</div>
<div> try: self.parent.OnGo()</div>
<div> File "/usr/local/phenix-1.4-3/phenix/wxGUI/Dialogs.py", line
470, in OnGo</div>
<div> gp.RunStrategy()</div>
<div> File "/usr/local/phenix-1.4-3/phenix/wxGUI/BMPTaskCanvas.py",
line 1170, in RunStrategy</div>
<div> self.RunRemotely()</div>
<div> File "/usr/local/phenix-1.4-3/phenix/wxGUI/BMPTaskCanvas.py",
line 1380, in RunRemotely</div>
<div> remote = frame.RemoteHostName,</div>
<div> File
"/usr/local/phenix-1.4-3/phenix/phenix/pds_server/StrategyUtils.py",
line 124, in RunStrategy</div>
<div> LastStrategy</div>
<div> File
"/usr/local/phenix-1.4-3/phenix/phenix/server/PhenixClient.py", line
87, in StartProcessMaster</div>
<div> return self._remote_call('StartProcessMaster',arg,kw)</div>
<div> File
"/usr/local/phenix-1.4-3/phenix/phenix/server/PhenixClient.py", line
466, in _remote_call</div>
<div> raise result</div>
<div>AssertionError: No user for ssh to machine 192.168.1.3</div>
<div>Traceback (most recent call last):</div>
<div> File "/usr/local/phenix-1.4-3/phenix/wxGUI/wxtask.py", line
892, in OnTableKillFocus</div>
<div> self.OnTableTextEnter(event)</div>
<div> File "/usr/local/phenix-1.4-3/phenix/wxGUI/wxtask.py", line
861, in OnTableTextEnter</div>
<div> (grid, cbox, ctrl, t_param, ir, ic) =
self.get_event_table(event)</div>
<div> File "/usr/local/phenix-1.4-3/phenix/wxGUI/wxtask.py", line
1204, in get_event_table</div>
<div> (ctrl, group_list, key_list, winszr) =
self.get_ctrl_context(evtwin)</div>
<div> File "/usr/local/phenix-1.4-3/phenix/wxGUI/wxtask.py", line
1173, in get_ctrl_context</div>
<div> result = self.RootWinSzr.FindInParentSizer(ctrl)</div>
<div> File "/usr/local/phenix-1.4-3/phenix/wxGUI/wxtask.py", line
159, in FindInParentSizer</div>
<div> result = child.FindInParentSizer(window, child_groups,
child_keys)</div>
<div> File "/usr/local/phenix-1.4-3/phenix/wxGUI/wxtask.py", line
143, in FindInParentSizer</div>
<div> if (child.GetId() == SearchWinId):</div>
<div> File
"/usr/local/phenix-1.4-3/build/mac-intel-osx/base/Python.framework/Versions/2.6/lib/python2.6/site-packages/wx-2.8-mac-ansi/wx/_core.py",
line 14522, in __getattr__</div>
<div> raise PyDeadObjectError(self.attrStr % self._name)</div>
<div>wx._core.PyDeadObjectError: The C++ part of the Panel object has
been deleted, attribute access no longer allowed.</div>
<div>"</div>
</div>
<pre wrap="">
<hr size="4" width="90%">
_______________________________________________
phenixbb mailing list
<a class="moz-txt-link-abbreviated" href="mailto:phenixbb@phenix-online.org">phenixbb@phenix-online.org</a>
<a class="moz-txt-link-freetext" href="http://www.phenix-online.org/mailman/listinfo/phenixbb">http://www.phenix-online.org/mailman/listinfo/phenixbb</a>
</pre>
</blockquote>
<br>
<pre class="moz-signature" cols="72">--
Nigel W. Moriarty
Building 64R0246B, Physical Biosciences Division
Lawrence Berkeley National Laboratory
Berkeley, CA 94720-8235
Phone : 510-486-5709
Fax : 510-486-5909
Email : <a class="moz-txt-link-abbreviated" href="mailto:NWMoriarty@LBL.gov">NWMoriarty@LBL.gov</a>
Web : CCI.LBL.gov</pre>
</body>
</html>